当前解析结果
SmilChr02G001950| 统一新 Gene ID | SmilChr02G001950 |
|---|---|
| 名称 | SmilChr02G001950 |
| 描述 | uncharacterized SmilChr02G001950 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 35186933 - 35203320 / + |
| NCBI Gene ID | LOC131008370 |
|---|---|
| GeneID | 131008370 |
| locus_tag | - |
| NCBI Name | LOC131008370 |
| 原始查询 | SmilChr02G001950 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=28.9; qcov=0.279; evalue=9.37e-43; confidence=weak |
| Rice | Os06g0484800- identity=29.3; qcov=0.532; evalue=1.12e-96; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF13966 (zf-RVT); PF14392 (zf-CCHC_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008370 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791237.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057791237.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057791237.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791237.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791237.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:35186972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,B86 |
Chr2:35186975 |
G |
GAT |
2bp_insertion | frameshift_variant | 7 | B132,B58,B60,C24,C40,C52,C57 |
Chr2:35187002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B5,B9,C14,C26 |
Chr2:35187025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B44,B88 |
Chr2:35187054 |
TC |
T |
1bp_deletion | frameshift_variant | 14 | B139,B42,B43,B80,B83,B84,B97,C24,C3,C42,C58,C59,C8,C82 |
Chr2:35187060 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr2:35187077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B82,C14,D9 |
Chr2:35187086 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C5 |
Chr2:35187086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr2:35187095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B132 |
Chr2:35187101 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B91 |
Chr2:35187101 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791237.1PF14392
zf-CCHC_4 113-149 aa
PF00078
RVT_1 695-954 aa
PF13966
zf-RVT 1215-1292 aa
PF13456
RVT_3 1421-1540 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791237.1 |
Pfam | PF14392 |
zf-CCHC_4 | Domain | 113 | 149 | 3.6e-06 | 27.2 | Zinc knuckle |
XP_057791237.1 |
Pfam | PF00078 |
RVT_1 | Domain | 695 | 954 | 8e-30 | 104.9 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057791237.1 |
Pfam | PF13966 |
zf-RVT | Domain | 1215 | 1292 | 8.2e-14 | 52.8 | zinc-binding in reverse transcriptase |
XP_057791237.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1421 | 1540 | 2.8e-15 | 57.0 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。