当前解析结果
SmilChr02G001961| 统一新 Gene ID | SmilChr02G001961 |
|---|---|
| 名称 | SmilChr02G001961 |
| 描述 | interactor of constitutive active ROPs 4-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 35399866 - 35402061 / + |
| NCBI Gene ID | LOC131012181 |
|---|---|
| GeneID | 131012181 |
| locus_tag | - |
| NCBI Name | LOC131012181 |
| 原始查询 | SmilChr02G001961 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | interactor of constitutive active ROPs 4-like |
| 产物 | interactor of constitutive active ROPs 4-like |
| Arabidopsis | AT1G78430 (RIP4)ROP interactive partner 2 [Source:NCBI gene (formerly Entrezgene);Acc:844179] identity=49.6; qcov=1.05; evalue=5.78e-72; confidence=high |
| Rice | Os01g0757600- identity=53.3; qcov=0.322; evalue=7.2e-27; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012181 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796076.1 |
| 2 | Cytoskeleton | 细胞骨架 | 0.80000 | XP_057796076.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057796076.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057796076.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796076.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:35400821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr2:35400923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:35400935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D7 |
Chr2:35400938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B2,B28,D5 |
Chr2:35400952 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A10,A14,B107,B45,B68,C12,C23,C54,C78,D2 |
Chr2:35400953 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B12 |
Chr2:35400953 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr2:35400959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B70,B78,C62 |
Chr2:35400969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D7 |
Chr2:35401034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr2:35401059 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A10 |
Chr2:35401059 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。