Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001962`

染色体: Chr02 坐标: 35402068-35405318 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001962`
名称	SmilChr02G001962
描述	uncharacterized SmilChr02G001962
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	35402068 - 35405318 / `-`

ID 对照

NCBI Gene ID	`LOC131012180`
GeneID	`131012180`
locus_tag	`-`
NCBI Name	`LOC131012180`
原始查询	`SmilChr02G001962`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	coiled-coil protein (DUF572) [Source:NCBI gene (formerly Entrezgene);Acc:838283]; symbol=AT1G17130; hit=AT1G17130; species=arabidopsis; confidence=high
产物	coiled-coil protein (DUF572) [Source:NCBI gene (formerly Entrezgene);Acc:838283]; symbol=AT1G17130; hit=AT1G17130; species=arabidopsis; confidence=high
Arabidopsis	`AT1G17130` (AT1G17130) coiled-coil protein (DUF572) [Source:NCBI gene (formerly Entrezgene);Acc:838283] identity=65.1; qcov=1.01; evalue=1.75e-139; confidence=high
Rice	`Os01g0588700` - identity=59.2; qcov=1.03; evalue=9.4e-123; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0071006 (U2-type catalytic step 1 spliceosome)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF04502 (Saf4_Yju2)
InterPro	-
eggNOG	-
NR	GeneID:131012180

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796075.1`
2	Nucleoplasm	核质	0.60000	`XP_057796075.1`
3	Chromosome	染色体	0.00000	`XP_057796075.1`
4	Centromere	着丝粒	0.00000	`XP_057796075.1`
5	Chromatin	染色质	0.00000	`XP_057796075.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:35402341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:35402372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:35402385`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,C41
`Chr2:35403511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B21,B3,B38
`Chr2:35403528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr2:35404592`	`AG`	`A`	1bp_deletion	frameshift_variant	2	B104,D7
`Chr2:35404592`	`AG`	`A`	1bp_deletion	CDS_variant	2	B104,D7
`Chr2:35404599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B89,C43
`Chr2:35404708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr2:35404769`	`T`	`TC`	1bp_insertion	frameshift_variant	1	A10
`Chr2:35404769`	`T`	`TC`	1bp_insertion	CDS_variant	1	A10
`Chr2:35404782`	`TTA`	`T`	2bp_deletion	frameshift_variant	239	A1,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A23,A24,A3,A4,A5,A6,A7,A9,B1,B10,B100,B101,B102,B103,B104,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B135,B136,B137,B138,B139,B14,B140,B15,B16,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B59,B6,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C55,C56,C58,C59,C6,C60,C61,C62,C64,C65,C66,C67,C68,C69,C70,C71,C72,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796075.1

339 aa

170

339

Saf4_Yju2

PF04502 Saf4_Yju2 9-337 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796075.1`	Pfam	`PF04502`	Saf4_Yju2	Family	9	337	5.2e-99	332.7	Saf4/Yju2 protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940092.1
ATGGAGTATTTAATTAAATTAGGTATTTGGGACCCAGCATATTGCTTTTTAATAAAATTGGGGGAAGAGTCTAGGGTTACAGCGGCGCCGCGCCTCCGCCCATCCACCATCGCACTGCCGTCCCCGACGAATCCAATTGTTTGCGGTTAGCCGAGTAGCGAGCAGGAAAGATGGGAGAACGGAAAGTTTTGAACAAGTACTACCCGCCGGACTTCGATCCGGCGAAAATTCCGCGGCGGCGGCAGCCCAAGAACCAGCAG...

CDS

1 records

下载 CDS FASTA

LOC131012180
ATGGGAGAACGGAAAGTTTTGAACAAGTACTACCCGCCGGACTTCGATCCGGCGAAAATTCCGCGGCGGCGGCAGCCCAAGAACCAGCAGATGAAGGTGCGGATGATGCTTCCGATGAGCATCCGTTGTGGCACCTGCGGGAATTACATTTACAAGGGAACCAAATTCAATTCCCGCAAAGAAGACGTCGTCGGAGAGACCTACTTGGGGATCCAAATTTTCAGGTTTTATTTCAAGTGCACTAAATGCTCGGCTGAAAT...

Protein

1 records

下载 Protein FASTA

XP_057796075.1
MGERKVLNKYYPPDFDPAKIPRRRQPKNQQMKVRMMLPMSIRCGTCGNYIYKGTKFNSRKEDVVGETYLGIQIFRFYFKCTKCSAEITFKTDPQNSDYIVESGASRNFEPWRAEDEETEEEKKKRIAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSVDAMLEALQRSNEQKERKLLEEEEAYIKAVFQGQKKAPIVRRIDDEDIDDDDDEDDEDLEFFPLDAVGSSSRPLKRAKVPDEDLSKPTDILT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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