当前解析结果
SmilChr02G001969| 统一新 Gene ID | SmilChr02G001969 |
|---|---|
| 名称 | SmilChr02G001969 |
| 描述 | uncharacterized SmilChr02G001969 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 35626482 - 35628523 / - |
| NCBI Gene ID | LOC131012186 |
|---|---|
| GeneID | 131012186 |
| locus_tag | - |
| NCBI Name | LOC131012186 |
| 原始查询 | SmilChr02G001969 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SOUL heme-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:838280]; symbol=HBP1; hit=AT1G17100; species=arabidopsis; confidence=high |
| 产物 | SOUL heme-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:838280]; symbol=HBP1; hit=AT1G17100; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G17100 (HBP1)SOUL heme-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:838280] identity=63.4; qcov=0.898; evalue=1.19e-93; confidence=high |
| Rice | Os01g0210500- identity=65.2; qcov=0.831; evalue=1.01e-91; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04832 (SOUL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012186 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057796080.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796080.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796080.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796080.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796080.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:35626934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr2:35626942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,C35,C53,C76 |
Chr2:35626978 |
CT |
C |
1bp_deletion | frameshift_variant | 24 | A21,A4,B117,B12,B125,B127,B138,B17,B20,B23,B24,B53,B71,B85,B90,B92,C12,C53,C57,C58,C64,C66,C7,C72 |
Chr2:35627002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,A24,B77 |
Chr2:35627061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:35628163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr2:35628197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,B105 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796080.1PF04832
SOUL 42-221 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796080.1 |
Pfam | PF04832 |
SOUL | Family | 42 | 221 | 1.5e-52 | 178.8 | SOUL heme-binding protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。