Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr02G001974`

Chromosome: Chr02 Coordinates: 35718038-35719547 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr02G001974`
Name	SmilChr02G001974
Description	uncharacterized SmilChr02G001974
Chromosome / SeqID	Chr02 / NC_080388.1
Coordinates and Strand	35718038 - 35719547 / `-`

ID Mapping

NCBI Gene ID	`LOC131012190`
GeneID	`131012190`
locus_tag	`-`
NCBI Name	`LOC131012190`
Original query	`SmilChr02G001974`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	confidence=no_hit
Product	confidence=no_hit
Arabidopsis	`-` -
Rice	`-` -
GO	GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48)
InterPro	-
eggNOG	-
NR	GeneID:131012190

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796083.1`
2	Chromosome	染色体	0.00000	`XP_057796083.1`
3	Centromere	着丝粒	0.00000	`XP_057796083.1`
4	Chromatin	染色质	0.00000	`XP_057796083.1`
5	Telomere	端粒	0.00000	`XP_057796083.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr2:35718670`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,C19
`Chr2:35718843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr2:35718974`	`TC`	`T`	1bp_deletion	frameshift_variant	4	C3,C41,C61,C78
`Chr2:35718974`	`TC`	`T`	1bp_deletion	CDS_variant	4	C3,C41,C61,C78
`Chr2:35719198`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,C53

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057796083.1

107 aa

107

Peptidase_C48

PF02902 Peptidase_C48 2-80 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057796083.1`	Pfam	`PF02902`	Peptidase_C48	Domain	2	80	0.00027	21.6	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057940100.1
TAACATTACAACCTCAATAGTTATTAAGTTTTATGATCATTGCTATACTAATTTTTTTACTTGTATGAAATACTCCCTTTGTCCCAGCTGAAATGTCCTGCTTTCCTTTTTGGGTTGTCCCACTTGAAATATCCTGTTTCCTTTTTTGGCAATACACTCTCTCTCTATACTTAATATTTAAATAATTTCCACTAACCCACTTTATCTACTTTATACACATTTCTTAATCTCCGTGCCGAAAAGAAACAAGACATTTAAGC...

CDS

1 records

Download CDS FASTA

LOC131012190
ATGTTCGACTCTCTTTATAATAGAATTCGTAATGTCCCTTGGAAAGCTGCTGTTGACAATGCTATGAGTATCTACAATGCAAACAAAGGAAAGAAATTCAAGAACTCGGCAAAATGGGAAACTGTAAAGGCTCCTAGGCAACCTGGTGGTACGGAATGTGGATTTTTTGTGATGCGCTATATGAAAGAAATAGTGCAAGGGTTTGAAAAGGACGCCAATATTTCTCTGCCATCATTGTTTACGAATGTACAATATTCTCA...

Protein

1 records

Download Protein FASTA

XP_057796083.1
MFDSLYNRIRNVPWKAAVDNAMSIYNANKGKKFKNSAKWETVKAPRQPGGTECGFFVMRYMKEIVQGFEKDANISLPSLFTNVQYSQVEIDEVREEWAKCVLTHVLD

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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