当前解析结果
SmilChr02G001987| 统一新 Gene ID | SmilChr02G001987 |
|---|---|
| 名称 | SmilChr02G001987 |
| 描述 | uncharacterized SmilChr02G001987 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 35885164 - 35885796 / - |
| NCBI Gene ID | LOC131008380 |
|---|---|
| GeneID | 131008380 |
| locus_tag | - |
| NCBI Name | LOC131008380 |
| 原始查询 | SmilChr02G001987 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0225900; species=rice; confidence=low |
| 产物 | hit=Os08g0225900; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os08g0225900- identity=29.3; qcov=0.633; evalue=1.92e-07; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008380 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791247.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057791247.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057791247.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057791247.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057791247.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:35885190 |
TGG |
T |
2bp_deletion | frameshift_variant | 4 | B129,B41,C10,C26 |
Chr2:35885190 |
TGG |
T |
2bp_deletion | CDS_variant | 4 | B129,B41,C10,C26 |
Chr2:35885194 |
A |
AAG |
2bp_insertion | frameshift_variant | 48 | A1,A15,A2,A25,A5,B103,B11,B120,B125,B14,B27,B29,B3,B34,B47,B54,B55,B59,B69,B70,B78,B80,B81,B85,B93,B94,B95,C10,C2,C21,C23,C27,C45,C46,C48,C50,C53,C60,C62,C63,C69,C71,C74,C79,C81,C82,C85,D2 |
Chr2:35885195 |
GA |
G |
1bp_deletion | frameshift_variant | 4 | B129,B41,C10,C26 |
Chr2:35885195 |
GA |
G |
1bp_deletion | CDS_variant | 4 | B129,B41,C10,C26 |
Chr2:35885196 |
A |
AGC |
2bp_insertion | frameshift_variant | 25 | A1,A11,A5,B100,B122,B135,B137,B3,B47,B55,B62,B74,B75,B76,B78,B81,B96,C2,C40,C46,C50,C7,C8,C85,D3 |
Chr2:35885219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C28 |
Chr2:35885231 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B121 |
Chr2:35885231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr2:35885266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B74,C40,C46,C7 |
Chr2:35885298 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:35885334 |
G |
A |
EMS_canonical_SNV | stop_gained | 30 | A16,A20,A8,A9,B109,B111,B114,B119,B121,B131,B16,B21,B25,B28,B52,B65,B86,B93,B99,C2,C28,C33,C38,C43,C56,C63,C65,C75,C79,C81 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。