Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001996`

染色体: Chr02 坐标: 36054525-36067502 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001996`
名称	SmilChr02G001996
描述	callose synthase 7-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	36054525 - 36067502 / `-`

ID 对照

NCBI Gene ID	`LOC131012210`
GeneID	`131012210`
locus_tag	`-`
NCBI Name	`LOC131012210`
原始查询	`SmilChr02G001996`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	callose synthase 7-like
产物	callose synthase 7-like
Arabidopsis	`AT1G06490` (CalS7) glucan synthase-like 7 [Source:NCBI gene (formerly Entrezgene);Acc:837160] identity=70; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0182300` (GSL5) - identity=55.3; qcov=1.02; evalue=0; confidence=high
GO	GO:0000148 (1,3-beta-D-glucan synthase complex); GO:0003843 (1,3-beta-D-glucan synthase activity); GO:0005886 (plasma membrane); GO:0006075 ((1->3)-beta-D-glucan biosynthetic process)
KEGG	-
Pfam	PF02364 (Glucan_synthase); PF14288 (FKS1_dom1); PF25968 (CALS1)
InterPro	-
eggNOG	-
NR	GeneID:131012210

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057796095.1`
2	Nucleus	细胞核	0.00000	`XP_057796095.1`
3	Chromosome	染色体	0.00000	`XP_057796095.1`
4	Centromere	着丝粒	0.00000	`XP_057796095.1`
5	Chromatin	染色质	0.00000	`XP_057796095.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:36055504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B82,C18,C2,C24,C50
`Chr2:36055684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C28,C70
`Chr2:36055726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:36055771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B59,B80,C28,C61,C70
`Chr2:36055861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:36055930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:36056460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr2:36056745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C2
`Chr2:36057238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:36057758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B28,B72,B82,C18,C2
`Chr2:36058871`	`CT`	`C`	1bp_deletion	frameshift_variant	4	C13,C30,C6,C77
`Chr2:36058871`	`CT`	`C`	1bp_deletion	CDS_variant	4	C13,C30,C6,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796095.1

1770 aa

885

1770

FKS1_dom1

CALS1

Glucan_synthase

PF14288 FKS1_dom1 177-288 aa PF25968 CALS1 699-876 aa PF02364 Glucan_synthase 883-969 aa PF02364 Glucan_synthase 977-1583 aa

XP_057796097.1

1766 aa

883

1766

FKS1_dom1

CALS1

Glucan_synthase

PF14288 FKS1_dom1 177-288 aa PF25968 CALS1 695-872 aa PF02364 Glucan_synthase 879-965 aa PF02364 Glucan_synthase 973-1579 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796095.1`	Pfam	`PF14288`	FKS1_dom1	Family	177	288	4.8e-44	149.9	1,3-beta-glucan synthase subunit FKS1, domain-1
`XP_057796095.1`	Pfam	`PF25968`	CALS1	Domain	699	876	6.5e-66	222.2	Callose synthase 1 domain
`XP_057796095.1`	Pfam	`PF02364`	Glucan_synthase	Family	883	969	1e-227	759.1	1,3-beta-glucan synthase component
`XP_057796095.1`	Pfam	`PF02364`	Glucan_synthase	Family	977	1583	1e-227	759.1	1,3-beta-glucan synthase component
`XP_057796097.1`	Pfam	`PF14288`	FKS1_dom1	Family	177	288	4.9e-44	149.9	1,3-beta-glucan synthase subunit FKS1, domain-1
`XP_057796097.1`	Pfam	`PF25968`	CALS1	Domain	695	872	6.5e-66	222.2	Callose synthase 1 domain
`XP_057796097.1`	Pfam	`PF02364`	Glucan_synthase	Family	879	965	1.7e-227	758.3	1,3-beta-glucan synthase component
`XP_057796097.1`	Pfam	`PF02364`	Glucan_synthase	Family	973	1579	1.7e-227	758.3	1,3-beta-glucan synthase component

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940114.1
CAGCGGGCGGGGTGTTAGGCAATTTAAAACATACTTGCTACACAGACTTGAAAAGGAAGAAGCAGAGACAACACCTAAGCTTGCAAGTAACGATCCTAGAGAAATCCAGAAATATTATCAGCTGTTCTATGAGCACAATATCAAAAGGGGGGAACATACAAAAACACCGGAGGAGATGGCAAAGATCTATCAGATTGCTACTGTCTTGTATGATGTGCTAAGGACGGTAGTGCCGGCAACAAAAGTTGACAGTGAGACCC...

XM_057940112.1
TGCTACACAGACTTGAAAAGGAAGAAGCAGAGACAACACCTAAGCTTGCAAGTAACGATCCTAGAGAAATCCAGAAATATTATCAGCTGTTCTATGAGCACAATATCAAAAGGGGGGAACATACAAAAACACCGGAGGAGATGGCAAAGATCTATCAGATTGCTACTGTCTTGTATGATGTGCTAAGGACGGTAGTGCCGGCAACAAAAGTTGACAGTGAGACCCAAAGATATGCTAAAGATGTTCGGGAGAAAAAAGAA...

CDS

2 records

下载 CDS FASTA

LOC131012210
ATGGCAAAGATCTATCAGATTGCTACTGTCTTGTATGATGTGCTAAGGACGGTAGTGCCGGCAACAAAAGTTGACAGTGAGACCCAAAGATATGCTAAAGATGTTCGGGAGAAAAAAGAACAATATGAGCACTTCAACATTCTTCCCTTGCATGCTATTGGTGTTAAACCAGCAATTATGGAGCTCCCTGAGATCATAGCAGCGCTTCAAGCTATTCGTTATGTCGATTATCTTCCAACTTTCCAAATGCCTGAAGAAAG...

Protein

2 records

下载 Protein FASTA

XP_057796095.1
MAKIYQIATVLYDVLRTVVPATKVDSETQRYAKDVREKKEQYEHFNILPLHAIGVKPAIMELPEIIAALQAIRYVDYLPTFQMPEERERPVNDILEWLALRFGFQKGNVANQREHLILLLANMDIRNKNLQTYAHLDGKMIQDLMDRIFKNYQSWCKYLHLKQHLDCPRDERRQQLQLLYIGLYLLIWGEASNIRFMPECLCYIFHCMAKEMHETLFNNAQHVTGAATQLAPLGEESFLKKIVTPIYDVLQKEARRNKDG...

XP_057796097.1
MAKIYQIATVLYDVLRTVVPATKVDSETQRYAKDVREKKEQYEHFNILPLHAIGVKPAIMELPEIIAALQAIRYVDYLPTFQMPEERERPVNDILEWLALRFGFQKGNVANQREHLILLLANMDIRNKNLQTYAHLDGKMIQDLMDRIFKNYQSWCKYLHLKQHLDCPRDERRQQLQLLYIGLYLLIWGEASNIRFMPECLCYIFHCMAKEMHETLFNNAQHVTGAATQLAPLGEESFLKKIVTPIYDVLQKEARRNKDG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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