Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001997`

染色体: Chr02 坐标: 36105911-36120482 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001997`
名称	SmilChr02G001997
描述	callose synthase 7-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	36105911 - 36120482 / `-`

ID 对照

NCBI Gene ID	`LOC131012211`
GeneID	`131012211`
locus_tag	`-`
NCBI Name	`LOC131012211`
原始查询	`SmilChr02G001997`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	callose synthase 7-like
产物	callose synthase 7-like
Arabidopsis	`AT1G06490` (CalS7) glucan synthase-like 7 [Source:NCBI gene (formerly Entrezgene);Acc:837160] identity=69.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0182300` (GSL5) - identity=54.8; qcov=1.01; evalue=0; confidence=high
GO	GO:0000148 (1,3-beta-D-glucan synthase complex); GO:0003843 (1,3-beta-D-glucan synthase activity); GO:0005886 (plasma membrane); GO:0006075 ((1->3)-beta-D-glucan biosynthetic process)
KEGG	-
Pfam	PF02364 (Glucan_synthase); PF04652 (Vta1); PF14288 (FKS1_dom1); PF25968 (CALS1)
InterPro	-
eggNOG	-
NR	GeneID:131012211

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057796098.1`
2	Nucleus	细胞核	0.00000	`XP_057796098.1`
3	Chromosome	染色体	0.00000	`XP_057796098.1`
4	Centromere	着丝粒	0.00000	`XP_057796098.1`
5	Chromatin	染色质	0.00000	`XP_057796098.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:36106180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:36106276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B135,B57,B65,B98
`Chr2:36106294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B59,C28,C61,C70
`Chr2:36106877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr2:36107021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B50,C81
`Chr2:36108271`	`GC`	`G`	1bp_deletion	frameshift_variant	1	A25
`Chr2:36108271`	`GC`	`G`	1bp_deletion	CDS_variant	1	A25
`Chr2:36109092`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C76,D10
`Chr2:36109566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr2:36110263`	`CT`	`C`	1bp_deletion	frameshift_variant	20	A6,B105,B110,B122,B136,B50,B59,B62,B85,B87,B94,C11,C27,C30,C33,C37,C41,C64,C72,C87
`Chr2:36110325`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr2:36110367`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B21,B59,B73,C56

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796098.1

1913 aa

956

1913

Vta1

FKS1_dom1

CALS1

Glucan_synthase

PF04652 Vta1 49-176 aa PF14288 FKS1_dom1 320-431 aa PF25968 CALS1 842-1019 aa PF02364 Glucan_synthase 1026-1112 aa PF02364 Glucan_synthase 1120-1726 aa

XP_057796099.1

1909 aa

954

1909

Vta1

FKS1_dom1

CALS1

Glucan_synthase

PF04652 Vta1 49-176 aa PF14288 FKS1_dom1 320-431 aa PF25968 CALS1 838-1015 aa PF02364 Glucan_synthase 1022-1108 aa PF02364 Glucan_synthase 1116-1722 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796098.1`	Pfam	`PF04652`	Vta1	Family	49	176	1.1e-13	52.2	Vta1 like
`XP_057796098.1`	Pfam	`PF14288`	FKS1_dom1	Family	320	431	2.4e-43	147.7	1,3-beta-glucan synthase subunit FKS1, domain-1
`XP_057796098.1`	Pfam	`PF25968`	CALS1	Domain	842	1019	7.2e-66	222.0	Callose synthase 1 domain
`XP_057796098.1`	Pfam	`PF02364`	Glucan_synthase	Family	1026	1112	5.6e-228	759.9	1,3-beta-glucan synthase component
`XP_057796098.1`	Pfam	`PF02364`	Glucan_synthase	Family	1120	1726	5.6e-228	759.9	1,3-beta-glucan synthase component
`XP_057796099.1`	Pfam	`PF04652`	Vta1	Family	49	176	1.1e-13	52.2	Vta1 like
`XP_057796099.1`	Pfam	`PF14288`	FKS1_dom1	Family	320	431	2.4e-43	147.7	1,3-beta-glucan synthase subunit FKS1, domain-1
`XP_057796099.1`	Pfam	`PF25968`	CALS1	Domain	838	1015	7.2e-66	222.0	Callose synthase 1 domain
`XP_057796099.1`	Pfam	`PF02364`	Glucan_synthase	Family	1022	1108	1.9e-227	758.1	1,3-beta-glucan synthase component
`XP_057796099.1`	Pfam	`PF02364`	Glucan_synthase	Family	1116	1722	1.9e-227	758.1	1,3-beta-glucan synthase component

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940116.1
ATAGTTATCTTCGACACTTCTTCTTCTCCAAAGTGGAATTCTGATTCACAAGGCAGCTAAAGCCCTCAAAATCTTTCCACTATTTAACACATTTGACGAAATTAAAGCCACTCAAAAAGCAACCAATTTTCGAATTTATTGCGCCAAAATTCGTTCCTTCCTCATAGAGAAACCGAAAGAAAAGGGGAAAAGATTTTGCCCCACTTCTTCATCAAAGCATCAATCTTTCTCGCTTTGTATATATGCACAGATGCACTCTT...

XM_057940115.1
ATAGTTATCTTCGACACTTCTTCTTCTCCAAAGTGGAATTCTGATTCACAAGGCAGCTAAAGCCCTCAAAATCTTTCCACTATTTAACACATTTGACGAAATTAAAGCCACTCAAAAAGCAACCAATTTTCGAATTTATTGCGCCAAAATTCGTTCCTTCCTCATAGAGAAACCGAAAGAAAAGGGGAAAAGATTTTGCCCCACTTCTTCATCAAAGCATCAATCTTTCTCGCTTTGTATATATGCACAGATGCACTCTT...

CDS

2 records

下载 CDS FASTA

LOC131012211
ATGGCGAGTAGTAGTGGGACCAAGGACGATCTGGGCCCGCCGCGGTCTCTGTCGAAGAGGCTGACGAGGGCGCTAACTGTGATGGACCCTTCCGACGAAAACTCCGCCGTGGACAGTGAGCTGGTGCCTTCGTCGCTGGCATTCATTGCCCCAATTCTCCGCGTGGCCAATGAAATCGAGGAAGATAATCCCCGCGTTGCTTATTTGTGCCGTTTTCATGCACTTGAGCAAGCGCACAAGGCAGATCGAACATCCAGCGG...

Protein

2 records

下载 Protein FASTA

XP_057796098.1
MASSSGTKDDLGPPRSLSKRLTRALTVMDPSDENSAVDSELVPSSLAFIAPILRVANEIEEDNPRVAYLCRFHALEQAHKADRTSSGRGVRQFKTYLLHRLEKEEAETTPKLASNDPREIQKYYQLFYEHNIKRGEHTKTPEEMAKIYQIATVLYDVLRTVVPATKVDSETQRYAKDVREKKEQYEHFNILPLHAIGVKPAIMELPEIIAALQAIRYVDYLPTFQMPEERERPVNDILEWLALRFGFQKGNVANQREHLI...

XP_057796099.1
MASSSGTKDDLGPPRSLSKRLTRALTVMDPSDENSAVDSELVPSSLAFIAPILRVANEIEEDNPRVAYLCRFHALEQAHKADRTSSGRGVRQFKTYLLHRLEKEEAETTPKLASNDPREIQKYYQLFYEHNIKRGEHTKTPEEMAKIYQIATVLYDVLRTVVPATKVDSETQRYAKDVREKKEQYEHFNILPLHAIGVKPAIMELPEIIAALQAIRYVDYLPTFQMPEERERPVNDILEWLALRFGFQKGNVANQREHLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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