当前解析结果
SmilChr02G001998| 统一新 Gene ID | SmilChr02G001998 |
|---|---|
| 名称 | SmilChr02G001998 |
| 描述 | uncharacterized SmilChr02G001998 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 36143542 - 36143981 / - |
| NCBI Gene ID | LOC131008381 |
|---|---|
| GeneID | 131008381 |
| locus_tag | - |
| NCBI Name | LOC131008381 |
| 原始查询 | SmilChr02G001998 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | microtubule-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:828946]; symbol=AT4G28310; hit=AT4G28310; species=arabidopsis; confidence=low |
| 产物 | microtubule-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:828946]; symbol=AT4G28310; hit=AT4G28310; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G28310 (AT4G28310)microtubule-associated protein [Source:NCBI gene (formerly Entrezgene);Acc:828946] identity=31.1; qcov=1.14; evalue=3.5e-11; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008381 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057791248.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057791248.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791248.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791248.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791248.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:36143542 |
TTA |
T |
2bp_deletion | frameshift_variant | 33 | A21,B105,B107,B112,B18,B28,B31,B32,B36,B42,B43,B48,B55,B67,B76,B84,B88,B91,B93,C16,C18,C19,C26,C34,C40,C55,C64,C66,C70,C74,C77,D2,D7 |
Chr2:36143543 |
TA |
T |
1bp_deletion | frameshift_variant | 88 | A10,A13,A14,A16,A18,A2,A21,A22,A7,B100,B106,B109,B11,B111,B113,B114,B117,B118,B119,B12,B122,B125,B126,B127,B131,B132,B136,B138,B139,B17,B19,B20,B21,B23,B24,B26,B28,B33,B34,B37,B4,B41,B46,B50,B53,B56,B58,B61,B64,B65,B71,B72,B74,B78,B80,B82,B87,B90,B92,B95,B96,C10,C12,C14,C22,C30,C31,C35,C37,C47,C5,C51,C53,C57,C58,C60,C61,C68,C7,C72,C76,C82,C85,C86,C87,D1,D4,D6 |
Chr2:36143551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B19,B43 |
Chr2:36143552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr2:36143585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,B44,B48,B98,C84 |
Chr2:36143599 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B131,C55,C75,C9 |
Chr2:36143602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr2:36143657 |
CCT |
C |
2bp_deletion | frameshift_variant | 11 | A10,A8,B124,B49,B52,B63,B79,B99,C21,C41,C61 |
Chr2:36143662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,A19,B101,B126,B68 |
Chr2:36143665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B43,B93,C2,D10,D11 |
Chr2:36143679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B133,C6 |
Chr2:36143688 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B47,C79,D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。