Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002011`

染色体: Chr02 坐标: 36237640-36244549 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002011`
名称	SmilChr02G002011
描述	protein MEI2-like 2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	36237640 - 36244549 / `-`

ID 对照

NCBI Gene ID	`LOC131012221`
GeneID	`131012221`
locus_tag	`-`
NCBI Name	`LOC131012221`
原始查询	`SmilChr02G002011`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein MEI2-like 2
产物	protein MEI2-like 2
Arabidopsis	`AT1G29400` (ML5) MEI2-like protein 5 [Source:NCBI gene (formerly Entrezgene);Acc:839816] identity=54.5; qcov=0.977; evalue=0; confidence=high
Rice	`Os02g0719800` (ML2) - identity=54.9; qcov=1.04; evalue=0; confidence=high
GO	GO:0003723 (RNA binding)
KEGG	-
Pfam	PF00076 (RRM_1); PF04059 (RRM_2); PF13893 (RRM_5)
InterPro	-
eggNOG	-
NR	GeneID:131012221

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057796110.1`
2	Cytoplasm	细胞质	0.80000	`XP_057796110.1`
3	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057796112.1`
4	Cytosol	细胞质基质	0.40000	`XP_057796110.1`
5	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057796110.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:36238154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,C22
`Chr2:36238172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr2:36238183`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr2:36238205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:36238923`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,B132,B5,B94,D11
`Chr2:36239657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:36239673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr2:36239678`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B51,B73
`Chr2:36239698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr2:36239765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,B77
`Chr2:36239894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:36240037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796110.1

841 aa

420

841

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 177-261 aa PF00076 RRM_1 192-256 aa PF13893 RRM_5 274-350 aa PF00076 RRM_1 277-342 aa PF04059 RRM_2 683-779 aa

XP_057796111.1

841 aa

420

841

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 177-261 aa PF00076 RRM_1 192-256 aa PF13893 RRM_5 274-350 aa PF00076 RRM_1 277-342 aa PF04059 RRM_2 683-779 aa

XP_057796112.1

841 aa

420

841

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 177-261 aa PF00076 RRM_1 192-256 aa PF13893 RRM_5 274-350 aa PF00076 RRM_1 277-342 aa PF04059 RRM_2 683-779 aa

XP_057796113.1

841 aa

420

841

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 177-261 aa PF00076 RRM_1 192-256 aa PF13893 RRM_5 274-350 aa PF00076 RRM_1 277-342 aa PF04059 RRM_2 683-779 aa

XP_057796114.1

841 aa

420

841

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 177-261 aa PF00076 RRM_1 192-256 aa PF13893 RRM_5 274-350 aa PF00076 RRM_1 277-342 aa PF04059 RRM_2 683-779 aa

XP_057796115.1

815 aa

408

815

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 159-235 aa PF00076 RRM_1 166-230 aa PF13893 RRM_5 248-324 aa PF00076 RRM_1 251-316 aa PF04059 RRM_2 657-753 aa

XP_057796116.1

815 aa

408

815

RRM_5

RRM_1

RRM_5

RRM_1

RRM_2

PF13893 RRM_5 159-235 aa PF00076 RRM_1 166-230 aa PF13893 RRM_5 248-324 aa PF00076 RRM_1 251-316 aa PF04059 RRM_2 657-753 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796110.1`	Pfam	`PF13893`	RRM_5	Domain	177	261	4.9e-10	39.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796110.1`	Pfam	`PF00076`	RRM_1	Domain	192	256	3.8e-28	97.9	RNA recognition motif
`XP_057796110.1`	Pfam	`PF13893`	RRM_5	Domain	274	350	4.9e-10	39.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796110.1`	Pfam	`PF00076`	RRM_1	Domain	277	342	3.8e-28	97.9	RNA recognition motif
`XP_057796110.1`	Pfam	`PF04059`	RRM_2	Family	683	779	2.3e-55	185.5	RNA recognition motif 2
`XP_057796111.1`	Pfam	`PF13893`	RRM_5	Domain	177	261	4.9e-10	39.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796111.1`	Pfam	`PF00076`	RRM_1	Domain	192	256	3.8e-28	97.9	RNA recognition motif
`XP_057796111.1`	Pfam	`PF13893`	RRM_5	Domain	274	350	4.9e-10	39.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796111.1`	Pfam	`PF00076`	RRM_1	Domain	277	342	3.8e-28	97.9	RNA recognition motif
`XP_057796111.1`	Pfam	`PF04059`	RRM_2	Family	683	779	2.3e-55	185.5	RNA recognition motif 2
`XP_057796112.1`	Pfam	`PF13893`	RRM_5	Domain	177	261	4.9e-10	39.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796112.1`	Pfam	`PF00076`	RRM_1	Domain	192	256	3.8e-28	97.9	RNA recognition motif
`XP_057796112.1`	Pfam	`PF13893`	RRM_5	Domain	274	350	4.9e-10	39.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796112.1`	Pfam	`PF00076`	RRM_1	Domain	277	342	3.8e-28	97.9	RNA recognition motif
`XP_057796112.1`	Pfam	`PF04059`	RRM_2	Family	683	779	2.3e-55	185.5	RNA recognition motif 2
`XP_057796113.1`	Pfam	`PF13893`	RRM_5	Domain	177	261	4.9e-10	39.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796113.1`	Pfam	`PF00076`	RRM_1	Domain	192	256	3.8e-28	97.9	RNA recognition motif
`XP_057796113.1`	Pfam	`PF13893`	RRM_5	Domain	274	350	4.9e-10	39.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796113.1`	Pfam	`PF00076`	RRM_1	Domain	277	342	3.8e-28	97.9	RNA recognition motif
`XP_057796113.1`	Pfam	`PF04059`	RRM_2	Family	683	779	2.3e-55	185.5	RNA recognition motif 2
`XP_057796114.1`	Pfam	`PF13893`	RRM_5	Domain	177	261	4.9e-10	39.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796114.1`	Pfam	`PF00076`	RRM_1	Domain	192	256	3.8e-28	97.9	RNA recognition motif
`XP_057796114.1`	Pfam	`PF13893`	RRM_5	Domain	274	350	4.9e-10	39.9	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796114.1`	Pfam	`PF00076`	RRM_1	Domain	277	342	3.8e-28	97.9	RNA recognition motif
`XP_057796114.1`	Pfam	`PF04059`	RRM_2	Family	683	779	2.3e-55	185.5	RNA recognition motif 2
`XP_057796115.1`	Pfam	`PF13893`	RRM_5	Domain	159	235	6.8e-10	39.4	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796115.1`	Pfam	`PF00076`	RRM_1	Domain	166	230	3.4e-28	98.0	RNA recognition motif
`XP_057796115.1`	Pfam	`PF13893`	RRM_5	Domain	248	324	6.8e-10	39.4	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796115.1`	Pfam	`PF00076`	RRM_1	Domain	251	316	3.4e-28	98.0	RNA recognition motif
`XP_057796115.1`	Pfam	`PF04059`	RRM_2	Family	657	753	2.1e-55	185.6	RNA recognition motif 2
`XP_057796116.1`	Pfam	`PF13893`	RRM_5	Domain	159	235	6.8e-10	39.4	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796116.1`	Pfam	`PF00076`	RRM_1	Domain	166	230	3.4e-28	98.0	RNA recognition motif
`XP_057796116.1`	Pfam	`PF13893`	RRM_5	Domain	248	324	6.8e-10	39.4	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
`XP_057796116.1`	Pfam	`PF00076`	RRM_1	Domain	251	316	3.4e-28	98.0	RNA recognition motif
`XP_057796116.1`	Pfam	`PF04059`	RRM_2	Family	657	753	2.1e-55	185.6	RNA recognition motif 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057940130.1
GCCCTGTTTGGCGATCTACATGACACCATGCTTAGGGTTAATGAGCTCATAATGATAAACCTTATTTGTGATTTGTGAGCCCTACTTTTAGAGCCCCATCCAAACAGAACTTACCAAAACAGATATTAAAAACAAGCAATTATTTTCCAATCTTTCGCCATTGAATACTTTACCAAGCAAAAGATCTAATAAACAATTACTGTTCGGATTCAGACAGTACGATACCCCCTTTTCCCTCCAATCATTCTCCATTGTGTGTG...

XM_057940127.1
AACAGAACTTACCAAAACAGATATTAAAAACAAGCAATTATTTTCCAATCTTTCGCCATTGAATACTTTACCAAGCAAAAGATCTAATAAACAATTACTGTTCGGATTCAGACAGTACGATACCCCCTTTTCCCTCCAATCATTCTCCATTGTGTGTGCTTTCTCTCTCTGGAATTGTTCTGTTTCTCTCTCTAACCCACTCCACTGGTGTTACGGCGGGAGACGAGGAAGTGAAAGAGTAGAAGAAAACAATTCCCCTG...

CDS

7 records

下载 CDS FASTA

LOC131012221
ATGGAGCAATCAAAAAATCCTTTTACTGGTCCTACTAAAGCCCCTTCCCTGAGTATTTCCGATAAAGAAAAAAGTGCATGGAAACTTCCGAATGATACCAGTGCATATCATGCATCTACTGATGCTAGTCTGTTTTCTACCTCTTTGCCTGTCTTCCCGCACGTGAAATTTAATTTTAATGAATCTGAACGAGTCAGATCCATCGATCATGGCTTCCCTAACCTTACTAAAGGTCGTGTAGCGGATGAAGTTAAGGATCC...

Protein

7 records

下载 Protein FASTA

XP_057796110.1
MEQSKNPFTGPTKAPSLSISDKEKSAWKLPNDTSAYHASTDASLFSTSLPVFPHVKFNFNESERVRSIDHGFPNLTKGRVADEVKDPLEDTEPNTMGNLLPGDEDELFAGLMDDFDLSGLPTQLEELDDDFFGSGGGLEIESESHESLVNGISRLSTSDGISGSTISHYGFTNGVAAVSGEHPYGEHPSRTLFVRNINSNVEDSELKSLFEQFGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQSKPLRRRKLDIHF...

XP_057796111.1
MEQSKNPFTGPTKAPSLSISDKEKSAWKLPNDTSAYHASTDASLFSTSLPVFPHVKFNFNESERVRSIDHGFPNLTKGRVADEVKDPLEDTEPNTMGNLLPGDEDELFAGLMDDFDLSGLPTQLEELDDDFFGSGGGLEIESESHESLVNGISRLSTSDGISGSTISHYGFTNGVAAVSGEHPYGEHPSRTLFVRNINSNVEDSELKSLFEQFGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQSKPLRRRKLDIHF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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