当前解析结果
SmilChr02G002033| 统一新 Gene ID | SmilChr02G002033 |
|---|---|
| 名称 | SmilChr02G002033 |
| 描述 | uncharacterized SmilChr02G002033 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 36622214 - 36622996 / + |
| NCBI Gene ID | LOC131008391 |
|---|---|
| GeneID | 131008391 |
| locus_tag | - |
| NCBI Name | LOC131008391 |
| 原始查询 | SmilChr02G002033 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=low |
| 产物 | hit=Os12g0292200; species=rice; confidence=low |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=37.7; qcov=0.265; evalue=1.04e-06; confidence=weak |
| Rice | Os12g0292200- identity=29.8; qcov=0.362; evalue=2.36e-07; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008391 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057791258.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057791258.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057791258.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791258.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791258.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:36622230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr2:36622244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr2:36622265 |
C |
T |
EMS_canonical_SNV | stop_gained | 36 | A21,B107,B117,B125,B129,B138,B139,B17,B20,B24,B32,B42,B43,B49,B53,B71,B76,B85,B90,B91,B92,B93,C12,C18,C28,C50,C55,C56,C57,C58,C65,C7,C70,C72,C82,D9 |
Chr2:36622285 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B80,C61 |
Chr2:36622305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:36622328 |
C |
T |
EMS_canonical_SNV | stop_gained | 15 | A10,A18,A21,B12,B2,B28,B32,B79,B82,C37,C73,C86,C87,D4,D5 |
Chr2:36622402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C4 |
Chr2:36622418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,C4 |
Chr2:36622448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr2:36622451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B110,B33,B55,B78,D1 |
Chr2:36622489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,C21,C76 |
Chr2:36622495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。