Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002033

染色体: Chr02 坐标: 36622214-36622996 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002033
名称SmilChr02G002033
描述uncharacterized SmilChr02G002033
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向36622214 - 36622996 / +

ID 对照

NCBI Gene IDLOC131008391
GeneID131008391
locus_tag-
NCBI NameLOC131008391
原始查询SmilChr02G002033

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述hit=Os12g0292200; species=rice; confidence=low
产物hit=Os12g0292200; species=rice; confidence=low
ArabidopsisAT2G06105 (AT2G06105)
aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693]
identity=37.7; qcov=0.265; evalue=1.04e-06; confidence=weak
RiceOs12g0292200
-
identity=29.8; qcov=0.362; evalue=2.36e-07; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131008391

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057791258.1
2 Cytosol 细胞质基质 0.80000 XP_057791258.1
3 Nucleus 细胞核 0.40000 XP_057791258.1
4 Chromosome 染色体 0.00000 XP_057791258.1
5 Centromere 着丝粒 0.00000 XP_057791258.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:36622230 G A EMS_canonical_SNV CDS_variant 1 B102
Chr2:36622244 G A EMS_canonical_SNV CDS_variant 1 B102
Chr2:36622265 C T EMS_canonical_SNV stop_gained 36 A21,B107,B117,B125,B129,B138,B139,B17,B20,B24,B32,B42,B43,B49,B53,B71,B76,B85,B90,B91,B92,B93,C12,C18,C28,C50,C55,C56,C57,C58,C65,C7,C70,C72,C82,D9
Chr2:36622285 C T EMS_canonical_SNV CDS_variant 2 B80,C61
Chr2:36622305 C T EMS_canonical_SNV CDS_variant 1 A5
Chr2:36622328 C T EMS_canonical_SNV stop_gained 15 A10,A18,A21,B12,B2,B28,B32,B79,B82,C37,C73,C86,C87,D4,D5
Chr2:36622402 C T EMS_canonical_SNV CDS_variant 2 A5,C4
Chr2:36622418 G A EMS_canonical_SNV CDS_variant 2 A10,C4
Chr2:36622448 G A EMS_canonical_SNV CDS_variant 1 B102
Chr2:36622451 C T EMS_canonical_SNV CDS_variant 5 B110,B33,B55,B78,D1
Chr2:36622489 C T EMS_canonical_SNV CDS_variant 3 B118,C21,C76
Chr2:36622495 G A EMS_canonical_SNV CDS_variant 1 A5

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057935275.1
ATGACACTCAGAGGAGGAAAGGAGTTACCCGAAGTTGTCAAAGAAAAAAACCAAGAAAAGTTGGAGATCAACGAGCAAGTCGGAATAGGATCAGCAGATGAGGAAGAATTTGCTCAAGAGAAGAAGGCGAAGCGAAAGGCGGCAGGGAAGGGAAAAGAGAAATCAAGCCAGACTGAGCCCATAATCCCCTTCCCAGGCAGAATGGCCAAGGAACAAGAGAAGGAAGAATTAACCGAACTAGTTAAAATCTTCAAAAAGGT...

CDS

1 records

下载 CDS FASTA
LOC131008391
ATGACACTCAGAGGAGGAAAGGAGTTACCCGAAGTTGTCAAAGAAAAAAACCAAGAAAAGTTGGAGATCAACGAGCAAGTCGGAATAGGATCAGCAGATGAGGAAGAATTTGCTCAAGAGAAGAAGGCGAAGCGAAAGGCGGCAGGGAAGGGAAAAGAGAAATCAAGCCAGACTGAGCCCATAATCCCCTTCCCAGGCAGAATGGCCAAGGAACAAGAGAAGGAAGAATTAACCGAACTAGTTAAAATCTTCAAAAAGGT...

Protein

1 records

下载 Protein FASTA
XP_057791258.1
MTLRGGKELPEVVKEKNQEKLEINEQVGIGSADEEEFAQEKKAKRKAAGKGKEKSSQTEPIIPFPGRMAKEQEKEELTELVKIFKKVEVNMPLLVALRSMPRCAKFLKELCTRKVKYTDDAKFQVGESVSAVLQRDMPIKYGDPGMFYIPCVIGTMKVEKAMLDLGASINVMPLSMYQDLEIGPLKPTRVVIQLADRSNVYLEGILEDVLVKVEELIFPEDFYILDMGKSKARDPVMLLGRPFLKTARTRIDCDTGKQTC

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器