当前解析结果
SmilChr02G002057| 统一新 Gene ID | SmilChr02G002057 |
|---|---|
| 名称 | SmilChr02G002057 |
| 描述 | uncharacterized SmilChr02G002057 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 37043521 - 37044450 / - |
| NCBI Gene ID | LOC131008400 |
|---|---|
| GeneID | 131008400 |
| locus_tag | - |
| NCBI Name | LOC131008400 |
| 原始查询 | SmilChr02G002057 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=weak |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=weak |
| Arabidopsis | AT3G09510 (AT3G09510)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108] identity=23.3; qcov=1.04; evalue=2.48e-10; confidence=weak |
| Rice | Os01g0967700- identity=24.6; qcov=0.605; evalue=6.46e-08; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008400 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057791266.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057791266.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057791266.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057791266.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057791266.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:37043576 |
C |
T |
EMS_canonical_SNV | stop_gained | 33 | A15,A21,A25,A4,B10,B101,B110,B2,B20,B27,B30,B40,B5,B82,B87,B91,B94,C2,C25,C27,C32,C41,C55,C57,C59,C62,C64,C65,C66,C68,C71,C80,D11 |
Chr2:37043592 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,A19,B68,C43 |
Chr2:37043626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B50,B88,C3,C69 |
Chr2:37043637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr2:37043643 |
G |
GTT |
2bp_insertion | frameshift_variant | 3 | A13,A16,C61 |
Chr2:37043643 |
G |
GTT |
2bp_insertion | CDS_variant | 3 | A13,A16,C61 |
Chr2:37043645 |
T |
TTA |
2bp_insertion | frameshift_variant | 2 | A16,C61 |
Chr2:37043645 |
T |
TTA |
2bp_insertion | CDS_variant | 2 | A16,C61 |
Chr2:37043718 |
AC |
A |
1bp_deletion | frameshift_variant | 33 | A15,A21,A25,A4,B10,B101,B11,B110,B2,B20,B27,B30,B40,B5,B82,B87,B94,C19,C2,C25,C27,C32,C41,C55,C57,C59,C62,C64,C65,C68,C71,C80,C9 |
Chr2:37043727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr2:37043734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B30,B65 |
Chr2:37043736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,B3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057791266.1PF13966
zf-RVT 1-49 aa
PF13456
RVT_3 162-283 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057791266.1 |
Pfam | PF13966 |
zf-RVT | Domain | 1 | 49 | 1.1e-07 | 33.0 | zinc-binding in reverse transcriptase |
XP_057791266.1 |
Pfam | PF13456 |
RVT_3 | Domain | 162 | 283 | 4.4e-16 | 59.6 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。