当前解析结果
SmilChr02G002071| 统一新 Gene ID | SmilChr02G002071 |
|---|---|
| 名称 | SmilChr02G002071 |
| 描述 | tubulin-folding cofactor C-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 37296684 - 37298030 / + |
| NCBI Gene ID | LOC131012265 |
|---|---|
| GeneID | 131012265 |
| locus_tag | - |
| NCBI Name | LOC131012265 |
| 原始查询 | SmilChr02G002071 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tubulin-folding cofactor C-like |
| 产物 | tubulin-folding cofactor C-like |
| Arabidopsis | AT4G39920 (POR)C-CAP/cofactor C-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830151] identity=52; qcov=1.02; evalue=1.37e-106; confidence=high |
| Rice | Os02g0557000- identity=47; qcov=0.968; evalue=2.59e-92; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0007021 (tubulin complex assembly); GO:0007023 (post-chaperonin tubulin folding pathway); GO:0015631 (tubulin binding) |
| KEGG | - |
| Pfam | PF07986 (TBCC); PF16752 (TBCC_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012265 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057796156.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057796156.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057796156.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796156.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796156.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:37296898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr2:37296902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B55,B56,B96 |
Chr2:37297064 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,C28,C70 |
Chr2:37297147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C24,C50 |
Chr2:37297238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:37297310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:37297329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:37297331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,C34,C56,D6 |
Chr2:37297387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B126 |
Chr2:37297400 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B29 |
Chr2:37297400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr2:37297423 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B84,C26,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796156.1PF16752
TBCC_N 25-131 aa
PF07986
TBCC 204-320 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796156.1 |
Pfam | PF16752 |
TBCC_N | Domain | 25 | 131 | 6.9e-24 | 85.1 | Tubulin-specific chaperone C N-terminal domain |
XP_057796156.1 |
Pfam | PF07986 |
TBCC | Domain | 204 | 320 | 4.2e-38 | 130.5 | Tubulin binding cofactor C |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。