Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002071

染色体: Chr02 坐标: 37296684-37298030 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002071
名称SmilChr02G002071
描述tubulin-folding cofactor C-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向37296684 - 37298030 / +

ID 对照

NCBI Gene IDLOC131012265
GeneID131012265
locus_tag-
NCBI NameLOC131012265
原始查询SmilChr02G002071

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述tubulin-folding cofactor C-like
产物tubulin-folding cofactor C-like
ArabidopsisAT4G39920 (POR)
C-CAP/cofactor C-like domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:830151]
identity=52; qcov=1.02; evalue=1.37e-106; confidence=high
RiceOs02g0557000
-
identity=47; qcov=0.968; evalue=2.59e-92; confidence=high
GOGO:0005737 (cytoplasm); GO:0007021 (tubulin complex assembly); GO:0007023 (post-chaperonin tubulin folding pathway); GO:0015631 (tubulin binding)
KEGG-
PfamPF07986 (TBCC); PF16752 (TBCC_N)
InterPro-
eggNOG-
NRGeneID:131012265

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057796156.1
2 Cytosol 细胞质基质 0.80000 XP_057796156.1
3 Nucleus 细胞核 0.40000 XP_057796156.1
4 Chromosome 染色体 0.00000 XP_057796156.1
5 Centromere 着丝粒 0.00000 XP_057796156.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:37296898 C T EMS_canonical_SNV CDS_variant 1 B54
Chr2:37296902 G A EMS_canonical_SNV CDS_variant 3 B55,B56,B96
Chr2:37297064 G A EMS_canonical_SNV CDS_variant 3 A24,C28,C70
Chr2:37297147 C T EMS_canonical_SNV CDS_variant 2 C24,C50
Chr2:37297238 G A EMS_canonical_SNV CDS_variant 1 D10
Chr2:37297310 G A EMS_canonical_SNV CDS_variant 1 B32
Chr2:37297329 C T EMS_canonical_SNV CDS_variant 1 B1
Chr2:37297331 G A EMS_canonical_SNV CDS_variant 4 B132,C34,C56,D6
Chr2:37297387 C T EMS_canonical_SNV CDS_variant 2 B101,B126
Chr2:37297400 C T EMS_canonical_SNV stop_gained 1 B29
Chr2:37297400 C T EMS_canonical_SNV CDS_variant 1 B29
Chr2:37297423 G A EMS_canonical_SNV CDS_variant 3 B84,C26,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057796156.1
349 aa
N
1
174
349
TBCC_N
TBCC
C
PF16752 TBCC_N 25-131 aa PF07986 TBCC 204-320 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796156.1 Pfam PF16752 TBCC_N Domain 25 131 6.9e-24 85.1 Tubulin-specific chaperone C N-terminal domain
XP_057796156.1 Pfam PF07986 TBCC Domain 204 320 4.2e-38 130.5 Tubulin binding cofactor C

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940173.1
GAGAGAGAGAGAGAATAATTGGCACATTAATTTGAGTTCAATTCTTGGAAAAATTCAATTTCAGGTCAGTGAAATAAAAGAGCTGCAGCCGGAACACTACTTTCCAGCACGGCGAAATGGAAGACAAAGAGCAATCGTCGTATGATTCCAGCGCCGTTGCTCTCGAGCAGAAGCACGCGGCGATGCTGGAGCGTCTCGCCAACCGCCACCAGTCCCGCGCCACCGCAAAGCCTGAGCCCAACTCATCCGGATCCACACAA...

CDS

1 records

下载 CDS FASTA
LOC131012265
ATGGAAGACAAAGAGCAATCGTCGTATGATTCCAGCGCCGTTGCTCTCGAGCAGAAGCACGCGGCGATGCTGGAGCGTCTCGCCAACCGCCACCAGTCCCGCGCCACCGCAAAGCCTGAGCCCAACTCATCCGGATCCACACAATCGTTCCTGTCTCAGTTCTCGCAATCGAAGCTCTCAATCGAAGCCCAAATCTCCCGGATCCGAACACAGCCGGACCCGCCTAAAAAAACCGACCTGGAGGCGATCTCCCTCGAAAT...

Protein

1 records

下载 Protein FASTA
XP_057796156.1
MEDKEQSSYDSSAVALEQKHAAMLERLANRHQSRATAKPEPNSSGSTQSFLSQFSQSKLSIEAQISRIRTQPDPPKKTDLEAISLEISALEKLVAENSYLLPPYEVRNSLSAITYLRQTLDEASAAVAPKKKFAFKNKSSKKSAASAPDQKNEVVSEVKSNKINAGLGELGFRDSSAAPGFRNKDKEVLVKEFKRGELDARNGEFTLSNLRDCEVRLKGCLRAVFVDNVVKCKVYVGVVMGSVLIEGAEGCVFVLASHQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器