Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002076`

染色体: Chr02 坐标: 37348170-37351125 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002076`
名称	SmilChr02G002076
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	37348170 - 37351125 / `-`

ID 对照

NCBI Gene ID	`LOC131012272`
GeneID	`131012272`
locus_tag	`-`
NCBI Name	`LOC131012272`
原始查询	`SmilChr02G002076`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=44.1; qcov=1; evalue=0; confidence=medium
Rice	`Os03g0556600` - identity=42; qcov=1.08; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131012272

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057796171.1`
2	Nucleus	细胞核	0.00000	`XP_057796171.1`
3	Chromosome	染色体	0.00000	`XP_057796171.1`
4	Centromere	着丝粒	0.00000	`XP_057796171.1`
5	Chromatin	染色质	0.00000	`XP_057796171.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:37348356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,B35
`Chr2:37348437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,C81
`Chr2:37348449`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:37348657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B46,C81
`Chr2:37348839`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B80,C61,C74
`Chr2:37348935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr2:37349165`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,A4,A9,B131,B99
`Chr2:37349213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr2:37350051`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:37350057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr2:37350146`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr2:37350211`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796171.1

792 aa

396

792

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 68-169 aa PF00954 S_locus_glycop 201-309 aa PF08276 PAN_2 331-397 aa PF00069 Pkinase 486-686 aa PF07714 PK_Tyr_Ser-Thr 488-717 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796171.1`	Pfam	`PF01453`	B_lectin	Repeat	68	169	8.5e-30	104.0	D-mannose binding lectin
`XP_057796171.1`	Pfam	`PF00954`	S_locus_glycop	Domain	201	309	3.6e-23	82.9	S-locus glycoprotein domain
`XP_057796171.1`	Pfam	`PF08276`	PAN_2	Domain	331	397	1.2e-17	64.5	PAN-like domain
`XP_057796171.1`	Pfam	`PF00069`	Pkinase	Domain	486	686	1.1e-43	150.2	Protein kinase domain
`XP_057796171.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	488	717	3.2e-46	158.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940188.1
GAAATTAAATTAACAAACTTCACTACATTCTTACTCTAACAAGAAAATAAGTAACTAGCCTATGGGTCTCTTTGGCGCCCTCTGTTTTATAACCATTTTCATATCCTCCATTGCCGCCGACACACTTTCTGCAGGGCAATCTCTTGTTGATGATGGAGAGGTATTACTCTCTCCATCTCAAGTATTCGAGCTCGGATTCTTCTCTCCGGGCTCATCCACATCAAGATTCTTAGGAATATGGTACAAAGCCACACCGGACG...

CDS

1 records

下载 CDS FASTA

LOC131012272
ATGGGTCTCTTTGGCGCCCTCTGTTTTATAACCATTTTCATATCCTCCATTGCCGCCGACACACTTTCTGCAGGGCAATCTCTTGTTGATGATGGAGAGGTATTACTCTCTCCATCTCAAGTATTCGAGCTCGGATTCTTCTCTCCGGGCTCATCCACATCAAGATTCTTAGGAATATGGTACAAAGCCACACCGGACGTCGTCGTCTGGGTTGCAAACAGACAAAATCCTATCTCCGGCCTCACCGGAGTCCTAACTCT...

Protein

1 records

下载 Protein FASTA

XP_057796171.1
MGLFGALCFITIFISSIAADTLSAGQSLVDDGEVLLSPSQVFELGFFSPGSSTSRFLGIWYKATPDVVVWVANRQNPISGLTGVLTLSETGNLLLTSTQAEPPIIWSSNSSLSTPVLRLLDTGNLVVVDNENATYFWQSFDFPGDTRLPGMKMVNDPNTGLDKHLTSWKSPDDPSPGEFVFKIENHGLSQLSVLTGRRKTYRSGPWDGAQFTGLPPVTYRDIESERQFSGQGELIAISEAYSSSSIMRVTLSASGLIQRH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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