Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002078`

染色体: Chr02 坐标: 37361705-37364844 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002078`
名称	SmilChr02G002078
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	37361705 - 37364844 / `-`

ID 对照

NCBI Gene ID	`LOC131012270`
GeneID	`131012270`
locus_tag	`-`
NCBI Name	`LOC131012270`
原始查询	`SmilChr02G002078`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=44.4; qcov=0.989; evalue=0; confidence=medium
Rice	`Os01g0784700` - identity=44; qcov=1.01; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131012270

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057796169.1`
2	Nucleus	细胞核	0.00000	`XP_057796169.1`
3	Chromosome	染色体	0.00000	`XP_057796169.1`
4	Centromere	着丝粒	0.00000	`XP_057796169.1`
5	Chromatin	染色质	0.00000	`XP_057796169.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:37361822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:37361907`	`CT`	`C`	1bp_deletion	frameshift_variant	4	B12,B127,B23,B82
`Chr2:37361907`	`CT`	`C`	1bp_deletion	CDS_variant	4	B12,B127,B23,B82
`Chr2:37361926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B95,C14
`Chr2:37362033`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B19
`Chr2:37362033`	`AC`	`A`	1bp_deletion	CDS_variant	1	B19
`Chr2:37362100`	`ACT`	`A`	2bp_deletion	frameshift_variant	24	A18,B10,B102,B114,B119,B120,B123,B133,B134,B26,B27,B34,B4,B45,B70,B75,C21,C3,C35,C38,C57,C63,C9,D8
`Chr2:37362559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr2:37362660`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B62
`Chr2:37362660`	`TC`	`T`	1bp_deletion	CDS_variant	1	B62
`Chr2:37363281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B29,C19,C32,C68,D11
`Chr2:37364157`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796169.1

820 aa

410

820

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 83-183 aa PF00954 S_locus_glycop 215-321 aa PF08276 PAN_2 342-410 aa PF00069 Pkinase 502-702 aa PF07714 PK_Tyr_Ser-Thr 505-723 aa

XP_057796170.1

819 aa

410

819

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 83-183 aa PF00954 S_locus_glycop 215-321 aa PF08276 PAN_2 342-410 aa PF00069 Pkinase 501-701 aa PF07714 PK_Tyr_Ser-Thr 504-722 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796169.1`	Pfam	`PF01453`	B_lectin	Repeat	83	183	3.9e-32	111.5	D-mannose binding lectin
`XP_057796169.1`	Pfam	`PF00954`	S_locus_glycop	Domain	215	321	5.7e-24	85.5	S-locus glycoprotein domain
`XP_057796169.1`	Pfam	`PF08276`	PAN_2	Domain	342	410	2.7e-19	69.8	PAN-like domain
`XP_057796169.1`	Pfam	`PF00069`	Pkinase	Domain	502	702	3.5e-43	148.6	Protein kinase domain
`XP_057796169.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	505	723	9.8e-46	156.9	Protein tyrosine and serine/threonine kinase
`XP_057796170.1`	Pfam	`PF01453`	B_lectin	Repeat	83	183	3.9e-32	111.5	D-mannose binding lectin
`XP_057796170.1`	Pfam	`PF00954`	S_locus_glycop	Domain	215	321	5.7e-24	85.5	S-locus glycoprotein domain
`XP_057796170.1`	Pfam	`PF08276`	PAN_2	Domain	342	410	2.7e-19	69.8	PAN-like domain
`XP_057796170.1`	Pfam	`PF00069`	Pkinase	Domain	501	701	3.5e-43	148.6	Protein kinase domain
`XP_057796170.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	504	722	9.8e-46	156.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940187.1
TGTCACTTTAATGCCTACTACTTATTTGAAGGCAACTCCTCATGCAGTCATCAATTCTCTCTCTAAAAATGAAGCAGATCATCCAAATCCTCTGCGCTGCTCTCTCTCTCCTTGCCATTTTCGATTACTCTCCCGCAGCTGCTATTGCCACACTTTCTCCCGGCCAAACTCTCTCCCACGGCCAGCTTCTATCTTCTCCCGCTCAAATTTTCGAGCTAGGATTCTTCTCTCCCGCCAATTCCACCGCTAAATTTTTGGGA...

XM_057940186.1
TGTCACTTTAATGCCTACTACTTATTTGAAGGCAACTCCTCATGCAGTCATCAATTCTCTCTCTAAAAATGAAGCAGATCATCCAAATCCTCTGCGCTGCTCTCTCTCTCCTTGCCATTTTCGATTACTCTCCCGCAGCTGCTATTGCCACACTTTCTCCCGGCCAAACTCTCTCCCACGGCCAGCTTCTATCTTCTCCCGCTCAAATTTTCGAGCTAGGATTCTTCTCTCCCGCCAATTCCACCGCTAAATTTTTGGGA...

CDS

2 records

下载 CDS FASTA

LOC131012270
ATGCAGTCATCAATTCTCTCTCTAAAAATGAAGCAGATCATCCAAATCCTCTGCGCTGCTCTCTCTCTCCTTGCCATTTTCGATTACTCTCCCGCAGCTGCTATTGCCACACTTTCTCCCGGCCAAACTCTCTCCCACGGCCAGCTTCTATCTTCTCCCGCTCAAATTTTCGAGCTAGGATTCTTCTCTCCCGCCAATTCCACCGCTAAATTTTTGGGAATATGGTATAGAGCTACACCAGACGTCGTCGTGTGGGTCGC...

Protein

2 records

下载 Protein FASTA

XP_057796169.1
MQSSILSLKMKQIIQILCAALSLLAIFDYSPAAAIATLSPGQTLSHGQLLSSPAQIFELGFFSPANSTAKFLGIWYRATPDVVVWVANRQNPITGLTGVLTLSKTGNLILSSAQGTTTWSSNSSTAAASNPVLRLLDTGNLVLAENATNIWMSFDYPCDTRLPGMKMVYDSGAGLDKHLTSWKSPADPSPGDFVYKIENHGLPQMSILMGNEKKYRTGPWNGRNFTGLPFVRDPAYGAEIINGRLISYSDPYNSSIYMRL...

XP_057796170.1
MQSSILSLKMKQIIQILCAALSLLAIFDYSPAAAIATLSPGQTLSHGQLLSSPAQIFELGFFSPANSTAKFLGIWYRATPDVVVWVANRQNPITGLTGVLTLSKTGNLILSSAQGTTTWSSNSSTAAASNPVLRLLDTGNLVLAENATNIWMSFDYPCDTRLPGMKMVYDSGAGLDKHLTSWKSPADPSPGDFVYKIENHGLPQMSILMGNEKKYRTGPWNGRNFTGLPFVRDPAYGAEIINGRLISYSDPYNSSIYMRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器