当前解析结果
SmilChr02G002085| 统一新 Gene ID | SmilChr02G002085 |
|---|---|
| 名称 | SmilChr02G002085 |
| 描述 | uncharacterized SmilChr02G002085 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 37435182 - 37436929 / + |
| NCBI Gene ID | LOC131012283 |
|---|---|
| GeneID | 131012283 |
| locus_tag | - |
| NCBI Name | LOC131012283 |
| 原始查询 | SmilChr02G002085 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203]; symbol=AT5G41980; hit=AT5G41980; species=arabidopsis; confidence=high |
| 产物 | nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203]; symbol=AT5G41980; hit=AT5G41980; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G41980 (AT5G41980)nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=70.9; qcov=0.794; evalue=7.61e-56; confidence=high |
| Rice | Os08g0106900- identity=41.9; qcov=0.731; evalue=1.09e-27; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF26138 (DUF8040) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012283 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796188.1 |
| 2 | Telomere | 端粒 | 0.80000 | XP_057796188.1 |
| 3 | Chromosome | 染色体 | 0.60000 | XP_057796188.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057796188.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796188.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:37436062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:37436203 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B140 |
Chr2:37436276 |
T |
TTC |
2bp_insertion | frameshift_variant | 92 | A1,A11,A15,A19,A20,A24,A3,A5,A6,B100,B103,B108,B109,B110,B113,B114,B115,B117,B122,B125,B126,B138,B14,B140,B15,B17,B19,B26,B28,B29,B30,B32,B36,B4,B41,B42,B43,B44,B46,B49,B5,B50,B51,B52,B55,B57,B61,B63,B64,B66,B69,B72,B73,B74,B76,B8,B81,B83,B87,B9,B90,B92,B95,B97,C11,C19,C2,C21,C24,C28,C30,C32,C34,C41,C44,C54,C55,C61,C62,C69,C70,C71,C72,C73,C74,C79,C83,C84,C87,D7,D8,D9 |
Chr2:37436329 |
TC |
T |
1bp_deletion | frameshift_variant | 84 | A1,A11,A15,A19,A20,A24,A3,A5,A6,B100,B103,B108,B109,B110,B113,B114,B117,B125,B126,B138,B140,B15,B19,B26,B28,B29,B30,B32,B36,B4,B41,B42,B43,B44,B46,B49,B5,B50,B51,B52,B55,B57,B61,B63,B64,B66,B69,B72,B73,B74,B8,B81,B83,B87,B9,B90,B92,B95,B97,C11,C19,C2,C21,C28,C30,C34,C41,C44,C54,C55,C61,C62,C69,C70,C71,C72,C73,C79,C83,C84,C87,D7,D8,D9 |
Chr2:37436416 |
TG |
T |
1bp_deletion | frameshift_variant | 13 | A3,A5,B126,B19,B49,B52,B81,B87,B90,B92,C44,D7,D9 |
Chr2:37436474 |
AG |
A |
1bp_deletion | frameshift_variant | 69 | A1,A11,A15,A19,A5,A6,B100,B103,B109,B110,B113,B114,B117,B122,B125,B14,B140,B15,B17,B25,B26,B28,B29,B30,B32,B36,B41,B44,B46,B49,B5,B50,B51,B55,B57,B59,B61,B64,B66,B69,B73,B74,B76,B83,B87,B9,B90,B92,B95,B97,C11,C19,C2,C21,C24,C37,C41,C55,C62,C69,C70,C71,C74,C79,C83,C84,C87,D8,D9 |
Chr2:37436524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B49,B51,B87 |
Chr2:37436539 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B51,B87 |
Chr2:37436539 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B51,B87 |
Chr2:37436562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B35,B45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796188.1PF26138
DUF8040 37-131 aa
XP_057796189.1PF26138
DUF8040 37-131 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796188.1 |
Pfam | PF26138 |
DUF8040 | Domain | 37 | 131 | 9.3e-36 | 122.3 | Domain of unknown function (DUF8040) |
XP_057796189.1 |
Pfam | PF26138 |
DUF8040 | Domain | 37 | 131 | 8.4e-36 | 122.5 | Domain of unknown function (DUF8040) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。