Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002086

染色体: Chr02 坐标: 37437072-37456117 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002086
名称SmilChr02G002086
描述pentatricopeptide repeat-containing protein At3g16610
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向37437072 - 37456117 / +

ID 对照

NCBI Gene IDLOC131012278
GeneID131012278
locus_tag-
NCBI NameLOC131012278
原始查询SmilChr02G002086

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g16610
产物pentatricopeptide repeat-containing protein At3g16610
ArabidopsisAT3G16610 (AT3G16610)
pentatricopeptide (PPR) repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820912]
identity=50.4; qcov=0.815; evalue=0; confidence=high
RiceOs01g0977400
-
identity=51.3; qcov=0.953; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131012278

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057796176.1
2 Nucleus 细胞核 0.00000 XP_057796176.1
3 Chromosome 染色体 0.00000 XP_057796176.1
4 Centromere 着丝粒 0.00000 XP_057796176.1
5 Chromatin 染色质 0.00000 XP_057796176.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:37437427 C T EMS_canonical_SNV CDS_variant 4 B135,B84,C71,C77
Chr2:37452821 C T EMS_canonical_SNV CDS_variant 2 B80,C61
Chr2:37453098 GA G 1bp_deletion frameshift_variant 1 B112
Chr2:37453098 GA G 1bp_deletion CDS_variant 1 B112
Chr2:37453555 G A EMS_canonical_SNV CDS_variant 1 B98
Chr2:37453900 C T EMS_canonical_SNV CDS_variant 1 B81
Chr2:37453924 C T EMS_canonical_SNV CDS_variant 1 B131
Chr2:37453929 G A EMS_canonical_SNV CDS_variant 2 A18,B98
Chr2:37454032 G A EMS_canonical_SNV CDS_variant 2 A18,B98
Chr2:37454120 C T EMS_canonical_SNV CDS_variant 5 B42,B43,C56,C65,D9
Chr2:37454193 G A EMS_canonical_SNV CDS_variant 2 A18,B98
Chr2:37454230 G A EMS_canonical_SNV CDS_variant 4 A7,B46,C81,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796176.1
795 aa
N
1
398
795
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR_3
PPR
PPR_2
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF13812 PPR_3 81-129 aa PF13041 PPR_2 85-129 aa PF01535 PPR 86-115 aa PF01535 PPR 156-184 aa PF13041 PPR_2 183-223 aa PF01535 PPR 186-216 aa PF01535 PPR 361-386 aa PF01535 PPR 389-419 aa PF13812 PPR_3 452-497 aa PF01535 PPR 460-488 aa PF13041 PPR_2 487-535 aa PF01535 PPR 490-519 aa PF01535 PPR 525-552 aa PF20431 E_motif 605-667 aa PF20430 Eplus_motif 672-699 aa PF14432 DYW_deaminase 703-795 aa
XP_057796178.1
795 aa
N
1
398
795
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR_3
PPR
PPR_2
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF13812 PPR_3 81-129 aa PF13041 PPR_2 85-129 aa PF01535 PPR 86-115 aa PF01535 PPR 156-184 aa PF13041 PPR_2 183-223 aa PF01535 PPR 186-216 aa PF01535 PPR 361-386 aa PF01535 PPR 389-419 aa PF13812 PPR_3 452-497 aa PF01535 PPR 460-488 aa PF13041 PPR_2 487-535 aa PF01535 PPR 490-519 aa PF01535 PPR 525-552 aa PF20431 E_motif 605-667 aa PF20430 Eplus_motif 672-699 aa PF14432 DYW_deaminase 703-795 aa
XP_057796179.1
795 aa
N
1
398
795
PPR_3
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR_3
PPR
PPR_2
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF13812 PPR_3 81-129 aa PF13041 PPR_2 85-129 aa PF01535 PPR 86-115 aa PF01535 PPR 156-184 aa PF13041 PPR_2 183-223 aa PF01535 PPR 186-216 aa PF01535 PPR 361-386 aa PF01535 PPR 389-419 aa PF13812 PPR_3 452-497 aa PF01535 PPR 460-488 aa PF13041 PPR_2 487-535 aa PF01535 PPR 490-519 aa PF01535 PPR 525-552 aa PF20431 E_motif 605-667 aa PF20430 Eplus_motif 672-699 aa PF14432 DYW_deaminase 703-795 aa
XP_057796180.1
767 aa
N
1
384
767
PPR_3
PPR_2
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR
PPR_3
PPR
PPR_2
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF13812 PPR_3 53-101 aa PF13041 PPR_2 57-101 aa PF01535 PPR 58-87 aa PF01535 PPR 128-156 aa PF13812 PPR_3 154-204 aa PF13041 PPR_2 155-195 aa PF01535 PPR 158-188 aa PF01535 PPR 333-358 aa PF01535 PPR 361-391 aa PF13812 PPR_3 424-469 aa PF01535 PPR 432-460 aa PF13041 PPR_2 459-507 aa PF01535 PPR 462-491 aa PF01535 PPR 497-524 aa PF20431 E_motif 577-639 aa PF20430 Eplus_motif 644-671 aa PF14432 DYW_deaminase 675-767 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796176.1 Pfam PF13812 PPR_3 Repeat 81 129 1.4e-31 109.1 Pentatricopeptide repeat domain
XP_057796176.1 Pfam PF13041 PPR_2 Repeat 85 129 5.6e-67 222.4 PPR repeat family
XP_057796176.1 Pfam PF01535 PPR Repeat 86 115 8.8e-68 220.7 PPR repeat
XP_057796176.1 Pfam PF01535 PPR Repeat 156 184 8.8e-68 220.7 PPR repeat
XP_057796176.1 Pfam PF13041 PPR_2 Repeat 183 223 5.6e-67 222.4 PPR repeat family
XP_057796176.1 Pfam PF01535 PPR Repeat 186 216 8.8e-68 220.7 PPR repeat
XP_057796176.1 Pfam PF01535 PPR Repeat 361 386 8.8e-68 220.7 PPR repeat
XP_057796176.1 Pfam PF01535 PPR Repeat 389 419 8.8e-68 220.7 PPR repeat
XP_057796176.1 Pfam PF13812 PPR_3 Repeat 452 497 1.4e-31 109.1 Pentatricopeptide repeat domain
XP_057796176.1 Pfam PF01535 PPR Repeat 460 488 8.8e-68 220.7 PPR repeat
XP_057796176.1 Pfam PF13041 PPR_2 Repeat 487 535 5.6e-67 222.4 PPR repeat family
XP_057796176.1 Pfam PF01535 PPR Repeat 490 519 8.8e-68 220.7 PPR repeat
XP_057796176.1 Pfam PF01535 PPR Repeat 525 552 8.8e-68 220.7 PPR repeat
XP_057796176.1 Pfam PF20431 E_motif Repeat 605 667 1.6e-16 61.0 E motif
XP_057796176.1 Pfam PF20430 Eplus_motif Motif 672 699 7.6e-07 29.5 E+ motif
XP_057796176.1 Pfam PF14432 DYW_deaminase Domain 703 795 7.1e-41 138.7 DYW family of nucleic acid deaminases
XP_057796178.1 Pfam PF13812 PPR_3 Repeat 81 129 1.4e-31 109.1 Pentatricopeptide repeat domain
XP_057796178.1 Pfam PF13041 PPR_2 Repeat 85 129 5.6e-67 222.4 PPR repeat family
XP_057796178.1 Pfam PF01535 PPR Repeat 86 115 8.8e-68 220.7 PPR repeat
XP_057796178.1 Pfam PF01535 PPR Repeat 156 184 8.8e-68 220.7 PPR repeat
XP_057796178.1 Pfam PF13041 PPR_2 Repeat 183 223 5.6e-67 222.4 PPR repeat family
XP_057796178.1 Pfam PF01535 PPR Repeat 186 216 8.8e-68 220.7 PPR repeat
XP_057796178.1 Pfam PF01535 PPR Repeat 361 386 8.8e-68 220.7 PPR repeat
XP_057796178.1 Pfam PF01535 PPR Repeat 389 419 8.8e-68 220.7 PPR repeat
XP_057796178.1 Pfam PF13812 PPR_3 Repeat 452 497 1.4e-31 109.1 Pentatricopeptide repeat domain
XP_057796178.1 Pfam PF01535 PPR Repeat 460 488 8.8e-68 220.7 PPR repeat
XP_057796178.1 Pfam PF13041 PPR_2 Repeat 487 535 5.6e-67 222.4 PPR repeat family
XP_057796178.1 Pfam PF01535 PPR Repeat 490 519 8.8e-68 220.7 PPR repeat
XP_057796178.1 Pfam PF01535 PPR Repeat 525 552 8.8e-68 220.7 PPR repeat
XP_057796178.1 Pfam PF20431 E_motif Repeat 605 667 1.6e-16 61.0 E motif
XP_057796178.1 Pfam PF20430 Eplus_motif Motif 672 699 7.6e-07 29.5 E+ motif
XP_057796178.1 Pfam PF14432 DYW_deaminase Domain 703 795 7.1e-41 138.7 DYW family of nucleic acid deaminases
XP_057796179.1 Pfam PF13812 PPR_3 Repeat 81 129 1.4e-31 109.1 Pentatricopeptide repeat domain
XP_057796179.1 Pfam PF13041 PPR_2 Repeat 85 129 5.6e-67 222.4 PPR repeat family
XP_057796179.1 Pfam PF01535 PPR Repeat 86 115 8.8e-68 220.7 PPR repeat
XP_057796179.1 Pfam PF01535 PPR Repeat 156 184 8.8e-68 220.7 PPR repeat
XP_057796179.1 Pfam PF13041 PPR_2 Repeat 183 223 5.6e-67 222.4 PPR repeat family
XP_057796179.1 Pfam PF01535 PPR Repeat 186 216 8.8e-68 220.7 PPR repeat
XP_057796179.1 Pfam PF01535 PPR Repeat 361 386 8.8e-68 220.7 PPR repeat
XP_057796179.1 Pfam PF01535 PPR Repeat 389 419 8.8e-68 220.7 PPR repeat
XP_057796179.1 Pfam PF13812 PPR_3 Repeat 452 497 1.4e-31 109.1 Pentatricopeptide repeat domain
XP_057796179.1 Pfam PF01535 PPR Repeat 460 488 8.8e-68 220.7 PPR repeat
XP_057796179.1 Pfam PF13041 PPR_2 Repeat 487 535 5.6e-67 222.4 PPR repeat family
XP_057796179.1 Pfam PF01535 PPR Repeat 490 519 8.8e-68 220.7 PPR repeat
XP_057796179.1 Pfam PF01535 PPR Repeat 525 552 8.8e-68 220.7 PPR repeat
XP_057796179.1 Pfam PF20431 E_motif Repeat 605 667 1.6e-16 61.0 E motif
XP_057796179.1 Pfam PF20430 Eplus_motif Motif 672 699 7.6e-07 29.5 E+ motif
XP_057796179.1 Pfam PF14432 DYW_deaminase Domain 703 795 7.1e-41 138.7 DYW family of nucleic acid deaminases
XP_057796180.1 Pfam PF13812 PPR_3 Repeat 53 101 1.4e-31 109.1 Pentatricopeptide repeat domain
XP_057796180.1 Pfam PF13041 PPR_2 Repeat 57 101 2.9e-67 223.3 PPR repeat family
XP_057796180.1 Pfam PF01535 PPR Repeat 58 87 4.8e-68 221.5 PPR repeat
XP_057796180.1 Pfam PF01535 PPR Repeat 128 156 4.8e-68 221.5 PPR repeat
XP_057796180.1 Pfam PF13812 PPR_3 Repeat 154 204 1.4e-31 109.1 Pentatricopeptide repeat domain
XP_057796180.1 Pfam PF13041 PPR_2 Repeat 155 195 2.9e-67 223.3 PPR repeat family
XP_057796180.1 Pfam PF01535 PPR Repeat 158 188 4.8e-68 221.5 PPR repeat
XP_057796180.1 Pfam PF01535 PPR Repeat 333 358 4.8e-68 221.5 PPR repeat
XP_057796180.1 Pfam PF01535 PPR Repeat 361 391 4.8e-68 221.5 PPR repeat
XP_057796180.1 Pfam PF13812 PPR_3 Repeat 424 469 1.4e-31 109.1 Pentatricopeptide repeat domain
XP_057796180.1 Pfam PF01535 PPR Repeat 432 460 4.8e-68 221.5 PPR repeat
XP_057796180.1 Pfam PF13041 PPR_2 Repeat 459 507 2.9e-67 223.3 PPR repeat family
XP_057796180.1 Pfam PF01535 PPR Repeat 462 491 4.8e-68 221.5 PPR repeat
XP_057796180.1 Pfam PF01535 PPR Repeat 497 524 4.8e-68 221.5 PPR repeat
XP_057796180.1 Pfam PF20431 E_motif Repeat 577 639 1.5e-16 61.1 E motif
XP_057796180.1 Pfam PF20430 Eplus_motif Motif 644 671 7.4e-07 29.5 E+ motif
XP_057796180.1 Pfam PF14432 DYW_deaminase Domain 675 767 6.8e-41 138.7 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057940197.1
ATGCCAAATACGCAAACATCCCAGGGTTCATCGCCCCGTATCCTGGAGTGCCATATAGTAAACTCGAATTTGGTGGTGGCTTCCACCCACAAGATGCCTCGGAGCTCTTCAATCAGCGGCATTCTGCTCTGCACAACGTGAAGCTGCTCGTTGCAGCTTGTGCCCTGCACAATTACATTCGTGATGAGAGCCCCAACGACTGGATCTTCAATATGTACGAACACAAAGCTATAGAGACCGAACAACCACTTGTTAATGCA...
XM_057940193.1
TTTCTATAGCTTTGATATGTTATTCATCGGTCTCGACAACCTACAGTAAGCATGATTGGAAATAGGGGCACCGCCTCAACCATTGATAAATACTTGCAACTTCTTGAAACTTGTATAGAATCAAAATCATTAAATAAAGGTAAAATCGTCCATCAATTTCTTCTCAAATTTAGCGGTGAAGATTTCAGGTCAAATACCTTTGTCCTGGACAAGCTCACTCGTCTCTACATTTCATGCAAAAGGCCTCAACTTGCACGCCG...

CDS

4 records

下载 CDS FASTA
LOC131012278
ATGCAGACTCAGACATCCCCGTGGGAGCAGAAGAAGCCGAACGCGCCTCCCAGGTCAAATACCTTTGTCCTGGACAAGCTCACTCGTCTCTACATTTCATGCAAAAGGCCTCAACTTGCACGCCGGGTGTTCGATGAAATTGCGCAATCAGAAAGGAAAAACAAGACTACATTATGGAACCAAATGATTAGAGCTTTCGCATGGGATGGACCCTTTGAGAAAGCCGTGGAATTGTACGATGAGATGATCGATTCTGGGAT...
LOC131012278
ATGATTGGAAATAGGGGCACCGCCTCAACCATTGATAAATACTTGCAACTTCTTGAAACTTGTATAGAATCAAAATCATTAAATAAAGGTAAAATCGTCCATCAATTTCTTCTCAAATTTAGCGGTGAAGATTTCAGGTCAAATACCTTTGTCCTGGACAAGCTCACTCGTCTCTACATTTCATGCAAAAGGCCTCAACTTGCACGCCGGGTGTTCGATGAAATTGCGCAATCAGAAAGGAAAAACAAGACTACATTATG...

Protein

4 records

下载 Protein FASTA
XP_057796176.1
MIGNRGTASTIDKYLQLLETCIESKSLNKGKIVHQFLLKFSGEDFRSNTFVLDKLTRLYISCKRPQLARRVFDEIAQSERKNKTTLWNQMIRAFAWDGPFEKAVELYDEMIDSGIKPTKYTYPFVLKACSALQDVETGVKIRGHVKRDNLDKDVYVCTALVNFYVKCGCLVEARGVFDEMLERDVVAWNAMVSGYSSNGMYWDAIGLVLEMQRRGLEPNSSTVAAILPVIGGASRLRDGKSFHGFCLRRSFDRDVVVGTG...
XP_057796178.1
MIGNRGTASTIDKYLQLLETCIESKSLNKGKIVHQFLLKFSGEDFRSNTFVLDKLTRLYISCKRPQLARRVFDEIAQSERKNKTTLWNQMIRAFAWDGPFEKAVELYDEMIDSGIKPTKYTYPFVLKACSALQDVETGVKIRGHVKRDNLDKDVYVCTALVNFYVKCGCLVEARGVFDEMLERDVVAWNAMVSGYSSNGMYWDAIGLVLEMQRRGLEPNSSTVAAILPVIGGASRLRDGKSFHGFCLRRSFDRDVVVGTG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器