Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002088`

染色体: Chr02 坐标: 37477996-37482236 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002088`
名称	SmilChr02G002088
描述	protein SYM1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	37477996 - 37482236 / `+`

ID 对照

NCBI Gene ID	`LOC131012281`
GeneID	`131012281`
locus_tag	`-`
NCBI Name	`LOC131012281`
原始查询	`SmilChr02G002088`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein SYM1-like
产物	protein SYM1-like
Arabidopsis	`AT3G58720` (AT3G58720) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825041] identity=65.5; qcov=0.293; evalue=4.34e-25; confidence=weak
Rice	`Os09g0344900` - identity=42.1; qcov=0.54; evalue=6.75e-21; confidence=medium
GO	GO:0005737 (cytoplasm); GO:0016020 (membrane)
KEGG	smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00097 (zf-C3HC4); PF04117 (Mpv17_PMP22); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131012281

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796185.1`
2	Cytoplasm	细胞质	1.00000	`XP_057796185.1`
3	Cytosol	细胞质基质	1.00000	`XP_057796185.1`
4	Chloroplast membrane	叶绿体膜	0.80000	`XP_057796184.1`
5	Chloroplast	叶绿体	0.60000	`XP_057796184.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:37478220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B98
`Chr2:37478405`	`GC`	`G`	1bp_deletion	frameshift_variant	1	A6
`Chr2:37478405`	`GC`	`G`	1bp_deletion	CDS_variant	1	A6
`Chr2:37478408`	`AAG`	`A`	2bp_deletion	frameshift_variant	1	A6
`Chr2:37478408`	`AAG`	`A`	2bp_deletion	CDS_variant	1	A6
`Chr2:37479773`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr2:37479799`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,B67,B91
`Chr2:37479830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B80,C61
`Chr2:37480088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr2:37480432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B111,B16,C34,D6
`Chr2:37481455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:37481473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C32,C47,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796184.1

226 aa

113

226

Mpv17_PMP22

PF04117 Mpv17_PMP22 167-221 aa

XP_057796185.1

198 aa

198

zf-C3HC4_2

zf-rbx1

zf-RING_2

zf-RING_5

zf-RING_11

zf-RING_UBOX

zf-C3HC4

PF13923 zf-C3HC4_2 144-185 aa PF12678 zf-rbx1 144-186 aa PF13639 zf-RING_2 144-186 aa PF14634 zf-RING_5 144-186 aa PF17123 zf-RING_11 145-172 aa PF13445 zf-RING_UBOX 145-183 aa PF00097 zf-C3HC4 145-185 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796184.1`	Pfam	`PF04117`	Mpv17_PMP22	Family	167	221	8.8e-18	64.8	Mpv17 / PMP22 family
`XP_057796185.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	144	185	9.6e-10	38.8	Zinc finger, C3HC4 type (RING finger)
`XP_057796185.1`	Pfam	`PF12678`	zf-rbx1	Domain	144	186	5.7e-09	36.8	RING-H2 zinc finger domain
`XP_057796185.1`	Pfam	`PF13639`	zf-RING_2	Domain	144	186	1.1e-14	55.1	Ring finger domain
`XP_057796185.1`	Pfam	`PF14634`	zf-RING_5	Domain	144	186	5.6e-07	30.1	zinc-RING finger domain
`XP_057796185.1`	Pfam	`PF17123`	zf-RING_11	Domain	145	172	3e-11	43.5	RING-like zinc finger
`XP_057796185.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	145	183	2.3e-07	31.4	RING-type zinc-finger
`XP_057796185.1`	Pfam	`PF00097`	zf-C3HC4	Domain	145	185	7.3e-09	36.1	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009097259.1
ATCAATTTCCGGCTTACCCCTTTCTAGTTACTTTGTCGCAATCTAGTCCCAATATAGAATGGATAGCACCAACCACATGAAATGAAACTACTCTACTCTACTAGTGTAAAACAAGGATTTAAGGAGATCGATTTCAGCCTCTTAAAATTGTGGCGTCGCTGCAAAAATGAGGTCTTTGGGAAATGGCGGCATATGGGGAATGGGCCCATTTCACGATAACTTTCGGCGGCGGAGAAATATCAAAAGAGAATCGAAGCCCT...

XM_057940201.1
AGAATGGATAGCACCAACCACATGAAATGAAACTACTCTACTCTACTAGTGTAAAACAAGGATTTAAGGAGATCGATTTCAGCCTCTTAAAATTGTGGCGTCGCTGCAAAAATGAGGTCTTTGGGAAATGGCGGCATATGGGGAATGGGCCCATTTCACGATAACTTTCGGCGGCGGAGAAATATCAAAAGAGAATCGAAGCCCTCCAATTCAATAGACTCCGCCGCCGCCCGCGGTGGAGGCGGCGGTTACCAGTTCCC...

CDS

2 records

下载 CDS FASTA

LOC131012281
ATGAGGTCTTTGGGAAATGGCGGCATATGGGGAATGGGCCCATTTCACGATAACTTTCGGCGGCGGAGAAATATCAAAAGAGAATCGAAGCCCTCCAATTCAATAGACTCCGCCGCCGCCCGCGGTGGAGGCGGCGGTTACCAGTTCCCCCTCCAGCAAGCCGCCACCAGCGCCGCCCTTTGCTTGACCGGAGACACCATTGCCCAGCTCCGCCACCGTTGGGTCAGAAATAAGGAAACCCTTGCCAAGTCTGAAGATGT...

LOC131012281
ATGAGTGGAAGCTTCCGGAATTCCCGACAGCCGGAAAGTTGGCCGTCTGGACAGGAGTACTGGATTTATCTTCCTGTTAATCGATCCGGCTTGCTTCCTCCGATCAGATCTCTGAATCCTAGAGCAGGAACAAGAAATCCATGGTTGTTAGTTGAGGAGAGTTTCATAGGAAGGCATGATCATGGTTTGGCGAGTTTCCCCCCAGCCCATGCCCATGCCCATCCGTCGGTGCCCCTCCGCCTGATGGAGGATTCATATCC...

Protein

2 records

下载 Protein FASTA

XP_057796184.1
MRSLGNGGIWGMGPFHDNFRRRRNIKRESKPSNSIDSAAARGGGGGYQFPLQQAATSAALCLTGDTIAQLRHRWVRNKETLAKSEDVKDIISTLSSEHDYIRALRMSSYGFLLYGPGSYAWYQLLDHFMPQKNFQNLTAKVVLNQILLGPTVIAVIFAWNNLWLGKLSELPDKYKNDALPTLLTGFKFWIPVSILNFGAVPLQARVAFMSMSSIFWNFYLSSTMSR

XP_057796185.1
MSGSFRNSRQPESWPSGQEYWIYLPVNRSGLLPPIRSLNPRAGTRNPWLLVEESFIGRHDHGLASFPPAHAHAHPSVPLRLMEDSYPAPLESPPWNRRSEESKLSPEEQKQAVNKLRKQLYSPHIYNIIRRLGNKSSNDEEGKRCAVCLEDFETKQFVTITPCNHMFHEECIVPWVKSQGKCPVCRFLIVQPERGLLF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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