Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002089`

染色体: Chr02 坐标: 37484332-37487742 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002089`
名称	SmilChr02G002089
描述	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	37484332 - 37487742 / `+`

ID 对照

NCBI Gene ID	`LOC131012279`
GeneID	`131012279`
locus_tag	`-`
NCBI Name	`LOC131012279`
原始查询	`SmilChr02G002089`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
产物	ATP-dependent zinc metalloprotease FTSH 2%2C chloroplastic
Arabidopsis	`AT2G30950` (VAR2) FtsH extracellular protease family [Source:NCBI gene (formerly Entrezgene);Acc:817646] identity=86.4; qcov=0.99; evalue=0; confidence=high
Rice	`Os06g0669400` (OsFtsH2) - identity=88.2; qcov=0.957; evalue=0; confidence=high
GO	GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding); GO:0009534 (chloroplast thylakoid); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF01434 (Peptidase_M41); PF06068 (TIP49); PF06480 (FtsH_ext); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:131012279

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057796181.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057796181.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057796181.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057796181.1`
5	Nucleus	细胞核	0.00000	`XP_057796181.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:37485312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr2:37485469`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:37486012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C2,C32,C47,C68
`Chr2:37486423`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr2:37486762`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr2:37487403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B42,B43,C56,C65,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796181.1

692 aa

346

692

FtsH_ext

TIP49

AAA

AAA_lid_3

Peptidase_M41

PF06480 FtsH_ext 88-163 aa PF06068 TIP49 266-302 aa PF00004 AAA 268-400 aa PF17862 AAA_lid_3 423-466 aa PF01434 Peptidase_M41 482-669 aa

XP_057796182.1

692 aa

346

692

FtsH_ext

TIP49

AAA

AAA_lid_3

Peptidase_M41

PF06480 FtsH_ext 88-163 aa PF06068 TIP49 266-302 aa PF00004 AAA 268-400 aa PF17862 AAA_lid_3 423-466 aa PF01434 Peptidase_M41 482-669 aa

XP_057796183.1

692 aa

346

692

FtsH_ext

TIP49

AAA

AAA_lid_3

Peptidase_M41

PF06480 FtsH_ext 88-163 aa PF06068 TIP49 266-302 aa PF00004 AAA 268-400 aa PF17862 AAA_lid_3 423-466 aa PF01434 Peptidase_M41 482-669 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796181.1`	Pfam	`PF06480`	FtsH_ext	Family	88	163	3.3e-07	31.2	FtsH Extracellular
`XP_057796181.1`	Pfam	`PF06068`	TIP49	Domain	266	302	9.5e-06	25.7	TIP49 P-loop domain
`XP_057796181.1`	Pfam	`PF00004`	AAA	Domain	268	400	1.3e-46	159.0	ATPase family associated with various cellular activities (AAA)
`XP_057796181.1`	Pfam	`PF17862`	AAA_lid_3	Domain	423	466	4.5e-14	52.4	AAA+ lid domain
`XP_057796181.1`	Pfam	`PF01434`	Peptidase_M41	Domain	482	669	1.5e-67	227.9	Peptidase family M41
`XP_057796182.1`	Pfam	`PF06480`	FtsH_ext	Family	88	163	3.3e-07	31.2	FtsH Extracellular
`XP_057796182.1`	Pfam	`PF06068`	TIP49	Domain	266	302	9.5e-06	25.7	TIP49 P-loop domain
`XP_057796182.1`	Pfam	`PF00004`	AAA	Domain	268	400	1.3e-46	159.0	ATPase family associated with various cellular activities (AAA)
`XP_057796182.1`	Pfam	`PF17862`	AAA_lid_3	Domain	423	466	4.5e-14	52.4	AAA+ lid domain
`XP_057796182.1`	Pfam	`PF01434`	Peptidase_M41	Domain	482	669	1.5e-67	227.9	Peptidase family M41
`XP_057796183.1`	Pfam	`PF06480`	FtsH_ext	Family	88	163	3.3e-07	31.2	FtsH Extracellular
`XP_057796183.1`	Pfam	`PF06068`	TIP49	Domain	266	302	9.5e-06	25.7	TIP49 P-loop domain
`XP_057796183.1`	Pfam	`PF00004`	AAA	Domain	268	400	1.3e-46	159.0	ATPase family associated with various cellular activities (AAA)
`XP_057796183.1`	Pfam	`PF17862`	AAA_lid_3	Domain	423	466	4.5e-14	52.4	AAA+ lid domain
`XP_057796183.1`	Pfam	`PF01434`	Peptidase_M41	Domain	482	669	1.5e-67	227.9	Peptidase family M41

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057940198.1
TGTTTAATATAGATCTACGTTTCAAGAAAAAAAAATACTGCCATATATAATTCAACGTAGTTAGAAAATTATGGACGAAAAATCTGACACTAAACCTCAAAAATAAAATAAAATATAGGAGAAATTAAAATGAAAGGGTAGACCAATCATTCACCAGCAAAAAGCCACGTAACCACATCCACTCCCTCTAAATTACTTCCTCGACCTTCAACTTCAAGCCCGTAACTTTCTCCCTCTCTCTCTCTCTCTCTCCTCCATAA...

XM_057940199.1
AAAAATCTGACACTAAACCTCAAAAATAAAATAAAATATAGGAGAAATTAAAATGAAAGGGTAGACCAATCATTCACCAGCAAAAAGCCACGTAACCACATCCACTCCCTCTAAATTACTTCCTCGACCTTCAACTTCAAGCCCGTAACTTTCTCCCTCTCTCTCTCTCTCTCTCCTCCATAATCACCTTCTCCCAGATTGAATGATTGTTTGATTTCAGAGGAACAAATATGGCTACCCTATCAGCATGTATAGTGGGG...

CDS

3 records

下载 CDS FASTA

LOC131012279
ATGGCTACCCTATCAGCATGTATAGTGGGGAACGGATTATATGGTGGTAATATCAGAAAAGGTTTTAGCAAAGAAATTTATGGCAAGCAGTTTATCCAGTGGTCATGCATTCCACTATCGAGTAGTACATCTAGAATAGTTAATGTTAGAGCATCATTGAGTCAAAAGAGCAGTGAAGGAAGACGAGGCTTTCTAAAATTGTTGCTCGGTAATGCTGGCCTAGCCGTACCTGCATTACTCGGCAATGGAAAAGCTATTGC...

Protein

3 records

下载 Protein FASTA

XP_057796181.1
MATLSACIVGNGLYGGNIRKGFSKEIYGKQFIQWSCIPLSSSTSRIVNVRASLSQKSSEGRRGFLKLLLGNAGLAVPALLGNGKAIADDQDASNSRMSYSRFLEYLDKDRVNKVDLFENGTIAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLANLIGNLAFPLLLIGGLFFLSRRSPGGMGGPGGPGFPLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAV...

XP_057796182.1
MATLSACIVGNGLYGGNIRKGFSKEIYGKQFIQWSCIPLSSSTSRIVNVRASLSQKSSEGRRGFLKLLLGNAGLAVPALLGNGKAIADDQDASNSRMSYSRFLEYLDKDRVNKVDLFENGTIAIVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLANLIGNLAFPLLLIGGLFFLSRRSPGGMGGPGGPGFPLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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