当前解析结果
SmilChr02G002099| 统一新 Gene ID | SmilChr02G002099 |
|---|---|
| 名称 | SmilChr02G002099 |
| 描述 | aspartate aminotransferase, mitochondrial |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 37662646 - 37667014 / + |
| NCBI Gene ID | LOC131012291 |
|---|---|
| GeneID | 131012291 |
| locus_tag | - |
| NCBI Name | LOC131012291 |
| 原始查询 | SmilChr02G002099 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartate aminotransferase, mitochondrial |
| 产物 | aspartate aminotransferase%2C mitochondrial |
| Arabidopsis | AT2G30970 (ASP1)aspartate aminotransferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:817648] identity=82.9; qcov=1; evalue=0; confidence=high |
| Rice | Os06g0548000- identity=87.7; qcov=0.951; evalue=0; confidence=high |
| GO | GO:0004069 (L-aspartate:2-oxoglutarate transaminase activity); GO:0005739 (mitochondrion); GO:0006520 (amino acid metabolic process); GO:0009058 (biosynthetic process); GO:0030170 (pyridoxal phosphate binding) |
| KEGG | smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil00950 (Isoquinoline alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00155 (Aminotran_1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012291 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057796198.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057796198.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796198.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796198.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796198.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:37662897 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B16,C34,C56,C81,D6 |
Chr2:37662901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C6,D3 |
Chr2:37664869 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B47,B78,C82 |
Chr2:37665116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:37665254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr2:37665863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B81,B83,C45 |
Chr2:37665885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796198.1PF00155
Aminotran_1_2 55-420 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796198.1 |
Pfam | PF00155 |
Aminotran_1_2 | Domain | 55 | 420 | 1.3e-90 | 305.0 | Aminotransferase class I and II |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。