Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002104`

染色体: Chr02 坐标: 37724969-37727465 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002104`
名称	SmilChr02G002104
描述	receptor homology region, transmembrane domain- and RING domain-containing protein 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	37724969 - 37727465 / `+`

ID 对照

NCBI Gene ID	`LOC131012297`
GeneID	`131012297`
locus_tag	`-`
NCBI Name	`LOC131012297`
原始查询	`SmilChr02G002104`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor homology region, transmembrane domain- and RING domain-containing protein 1
产物	receptor homology region%2C transmembrane domain- and RING domain-containing protein 1
Arabidopsis	`AT5G66160` (RMR1) receptor homology region transmembrane domain ring H2 motif protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:836748] identity=48.7; qcov=0.946; evalue=1.23e-79; confidence=high
Rice	`Os03g0167500` (OsRMR3) - identity=40; qcov=1.02; evalue=2.27e-62; confidence=medium
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF02225 (PA); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131012297

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057796210.1`
2	Vacuole membrane	液泡膜	0.80000	`XP_057796210.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057796210.1`
4	Trans-golgi network	Trans-golgi network	0.20000	`XP_057796210.1`
5	Nucleus	细胞核	0.00000	`XP_057796210.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:37725121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B19,B30,B82,C49
`Chr2:37725340`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C2,C32,C47,C68
`Chr2:37725418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B8,D11
`Chr2:37725419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr2:37726582`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr2:37726820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C2,C32,C47,C68
`Chr2:37727051`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796210.1

282 aa

141

282

zf-RING_2

zf-RING_11

zf-C3HC4

PF02225 PA 56-137 aa PF13639 zf-RING_2 223-270 aa PF17123 zf-RING_11 224-255 aa PF00097 zf-C3HC4 224-269 aa

XP_057796211.1

278 aa

139

278

zf-RING_2

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

PF02225 PA 56-137 aa PF13639 zf-RING_2 223-266 aa PF17123 zf-RING_11 224-251 aa PF13445 zf-RING_UBOX 224-263 aa PF00097 zf-C3HC4 224-265 aa PF13923 zf-C3HC4_2 224-265 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796210.1`	Pfam	`PF02225`	PA	Domain	56	137	5.3e-14	52.8	PA domain
`XP_057796210.1`	Pfam	`PF13639`	zf-RING_2	Domain	223	270	3e-12	47.3	Ring finger domain
`XP_057796210.1`	Pfam	`PF17123`	zf-RING_11	Domain	224	255	2.5e-06	27.8	RING-like zinc finger
`XP_057796210.1`	Pfam	`PF00097`	zf-C3HC4	Domain	224	269	3.2e-06	27.6	Zinc finger, C3HC4 type (RING finger)
`XP_057796211.1`	Pfam	`PF02225`	PA	Domain	56	137	5.2e-14	52.9	PA domain
`XP_057796211.1`	Pfam	`PF13639`	zf-RING_2	Domain	223	266	1.2e-13	51.8	Ring finger domain
`XP_057796211.1`	Pfam	`PF17123`	zf-RING_11	Domain	224	251	1.1e-09	38.5	RING-like zinc finger
`XP_057796211.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	224	263	5.1e-06	27.1	RING-type zinc-finger
`XP_057796211.1`	Pfam	`PF00097`	zf-C3HC4	Domain	224	265	5.1e-09	36.6	Zinc finger, C3HC4 type (RING finger)
`XP_057796211.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	224	265	6.1e-08	33.0	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940228.1
ATAATTTCAAAGATTTGTCAATTGCGGCCCCTTTCTGCATGAATAAAAACAGGCGCACAAAATCAACGACACAATCCCTCAAAATTCGATGACGAAATGAACAAATTCTTGATCTTTACACTTCTTCTCTGCTTCTTAACCGATCCAATCCTCTCAATCGTCCAGCTCAGTTCCATCTCCTCTTCGTTCCCGGACACTCCCGCCAGATTCACTAAAGGGCTGAACGGCAGCGTAATTTGCGGCGATTTGTGGGTAGCTGA...

XM_057940227.1
GCATGAATAAAAACAGGCGCACAAAATCAACGACACAATCCCTCAAAATTCGATGACGAAATGAACAAATTCTTGATCTTTACACTTCTTCTCTGCTTCTTAACCGATCCAATCCTCTCAATCGTCCAGCTCAGTTCCATCTCCTCTTCGTTCCCGGACACTCCCGCCAGATTCACTAAAGGGCTGAACGGCAGCGTAATTTGCGGCGATTTGTGGGTAGCTGAGCCGCTCGACGCCTGCTCCCCGCTGCTCGATGAAGT...

CDS

2 records

下载 CDS FASTA

LOC131012297
ATGAACAAATTCTTGATCTTTACACTTCTTCTCTGCTTCTTAACCGATCCAATCCTCTCAATCGTCCAGCTCAGTTCCATCTCCTCTTCGTTCCCGGACACTCCCGCCAGATTCACTAAAGGGCTGAACGGCAGCGTAATTTGCGGCGATTTGTGGGTAGCTGAGCCGCTCGACGCCTGCTCCCCGCTGCTCGATGAAGTCGAAGACGGCGGTGATGAGAGTGCGAATATTGTTCTGATTATGAGGGGGAACTGCGCGTT...

Protein

2 records

下载 Protein FASTA

XP_057796210.1
MNKFLIFTLLLCFLTDPILSIVQLSSISSSFPDTPARFTKGLNGSVICGDLWVAEPLDACSPLLDEVEDGGDESANIVLIMRGNCAFEEKIRNAQEAGFRAAIVYDDQLDHNLISMMGNPEGLWIYAVFVSNTAGETMRENARGVGGECCIISLVDETAWTVLVISFISVLAVICLLVSICFTVNQWRNCQETRTTAVDDKVVDMLPRITFGAVNLIDPIGETCIICLEDYKHGESLKVLPCRHVVFTGFHSSCVNSWLT...

XP_057796211.1
MNKFLIFTLLLCFLTDPILSIVQLSSISSSFPDTPARFTKGLNGSVICGDLWVAEPLDACSPLLDEVEDGGDESANIVLIMRGNCAFEEKIRNAQEAGFRAAIVYDDQLDHNLISMMGNPEGLWIYAVFVSNTAGETMRENARGVGGECCIISLVDETAWTVLVISFISVLAVICLLVSICFTVNQWRNCQETRTTAVDDKVVDMLPRITFGAVNLIDPIGETCIICLEDYKHGESLKVLPCRHGFHSSCVNSWLTKGAT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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