Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr02G002105`

Chromosome: Chr02 Coordinates: 37727777-37731661 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr02G002105`
Name	SmilChr02G002105
Description	uncharacterized SmilChr02G002105
Chromosome / SeqID	Chr02 / NC_080388.1
Coordinates and Strand	37727777 - 37731661 / `-`

ID Mapping

NCBI Gene ID	`LOC131012296`
GeneID	`131012296`
locus_tag	`-`
NCBI Name	`LOC131012296`
Original query	`SmilChr02G002105`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	arginine N-methyltransferase, putative (DUF688) [Source:NCBI gene (formerly Entrezgene);Acc:817650]; symbol=AT2G30990; hit=AT2G30990; species=arabidopsis; confidence=low
Product	arginine N-methyltransferase, putative (DUF688) [Source:NCBI gene (formerly Entrezgene);Acc:817650]; symbol=AT2G30990; hit=AT2G30990; species=arabidopsis; confidence=low
Arabidopsis	`AT2G30990` (AT2G30990) arginine N-methyltransferase, putative (DUF688) [Source:NCBI gene (formerly Entrezgene);Acc:817650] identity=32.4; qcov=1.05; evalue=1.4e-66; confidence=low
Rice	`Os01g0758900` - identity=32.1; qcov=0.348; evalue=1.39e-17; confidence=low
GO	-
KEGG	-
Pfam	PF05097 (DUF688)
InterPro	-
eggNOG	-
NR	GeneID:131012296

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057796203.1`
2	Nucleus	细胞核	0.00000	`XP_057796203.1`
3	Chromosome	染色体	0.00000	`XP_057796203.1`
4	Centromere	着丝粒	0.00000	`XP_057796203.1`
5	Chromatin	染色质	0.00000	`XP_057796203.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr2:37728095`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B58,D11
`Chr2:37728105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,B3
`Chr2:37728421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B23,C27,C44
`Chr2:37728855`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B42,B43,C56,C65,D9
`Chr2:37728856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B26,B45,B95,C14
`Chr2:37729049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr2:37729109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:37729227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:37729578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,B14
`Chr2:37729639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057796203.1

645 aa

322

645

DUF688

PF05097 DUF688 7-370 aa

XP_057796204.1

617 aa

308

617

DUF688

PF05097 DUF688 7-370 aa

XP_057796205.1

617 aa

308

617

DUF688

PF05097 DUF688 7-370 aa

XP_057796206.1

617 aa

308

617

DUF688

PF05097 DUF688 7-370 aa

XP_057796207.1

617 aa

308

617

DUF688

PF05097 DUF688 7-370 aa

XP_057796208.1

617 aa

308

617

DUF688

PF05097 DUF688 7-370 aa

XP_057796209.1

617 aa

308

617

DUF688

PF05097 DUF688 7-370 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057796203.1`	Pfam	`PF05097`	DUF688	Family	7	370	2.9e-82	278.0	Protein of unknown function (DUF688)
`XP_057796204.1`	Pfam	`PF05097`	DUF688	Family	7	370	2.4e-82	278.2	Protein of unknown function (DUF688)
`XP_057796205.1`	Pfam	`PF05097`	DUF688	Family	7	370	2.4e-82	278.2	Protein of unknown function (DUF688)
`XP_057796206.1`	Pfam	`PF05097`	DUF688	Family	7	370	2.4e-82	278.2	Protein of unknown function (DUF688)
`XP_057796207.1`	Pfam	`PF05097`	DUF688	Family	7	370	2.4e-82	278.2	Protein of unknown function (DUF688)
`XP_057796208.1`	Pfam	`PF05097`	DUF688	Family	7	370	2.4e-82	278.2	Protein of unknown function (DUF688)
`XP_057796209.1`	Pfam	`PF05097`	DUF688	Family	7	370	2.4e-82	278.2	Protein of unknown function (DUF688)

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

7 records

Download cDNA FASTA

XM_057940225.1
CATCACATGATCCAAAAAACACTACACCAAAAGGCAAAGTCCATCATTAATATACTAAGAAAATGTATGAATGCATTGATTCACTTAATCCCATAACAAAATTTTAAAATTTCACACACACACTAAAAGATGCCTGCAAAAAATAGTCTACTAGTATTACATGTTTCTCCTTCATTTACAGAAGCTTCCATCAATAAATATATACCCAAATTGGTTCTAGTGTATTGCAGCAAGAATTCAGCCAAGAAAAACAGTCCATA...

XM_057940220.1
CAAAAGGCAAAGTCCATCATTAATATACTAAGAAAATGTATGAATGCATTGATTCACTTAATCCCATAACAAAATTTTAAAATTTCACACACACACTAAAAGATGCCTGCAAAAAATAGTCTACTAGTATTACATGTTTCTCCTTCATTTACAGAAGCTTCCATCAATAAATATATACCCAAATTGGTTCTAGTGTATTGCAGCAAGAATTCAGCCAAGAAAAACAGTCCATATTCAAGATTCTTCATTCTTCTTGGGAA...

CDS

7 records

Download CDS FASTA

LOC131012296
ATGCTGCTGAAGAATCTGATGGAGGACAAGCAGCTGAATTTCGACCAACCATTTTTATCCGTGAGGCGACACGCACCACCAACTGTGACCTCTCAGAAACGAGACAACAAGAGAATCGATAGCTATTCCTATCAAGTAAGACCTCAGCTTCCTACTTATAGATCAGAGCTGAAATCCGGTCCTATTAGGAATCCCGGAGCAGTGCCATTTCTATGGGAACATTCCCCAGGACAACCTAAGGAGGAGGCGAAACCACAAAC...

Protein

7 records

Download Protein FASTA

XP_057796203.1
MLLKNLMEDKQLNFDQPFLSVRRHAPPTVTSQKRDNKRIDSYSYQVRPQLPTYRSELKSGPIRNPGAVPFLWEHSPGQPKEEAKPQTRSSDKPPIAPMLPPGRYPKAKQHDSRIVSRRTTGIKSQAVDAPCTSEDKKQDVPVSCDSRTGLSNDEDVKNDESRKDTPKEEEGGSDSEDSNEAYVDARDTLSRTEYSFLNCSMSGLSGVEDLDVKSSERFSTDPQAREFMMDRFLPAAKAMASETPHAPKKQPMQVQQQQQP...

XP_057796204.1
MLLKNLMEDKQLNFDQPFLSVRRHAPPTVTSQKRDNKRIDSYSYQVRPQLPTYRSELKSGPIRNPGAVPFLWEHSPGQPKEEAKPQTRSSDKPPIAPMLPPGRYPKAKQHDSRIVSRRTTGIKSQAVDAPCTSEDKKQDVPVSCDSRTGLSNDEDVKNDESRKDTPKEEEGGSDSEDSNEAYVDARDTLSRTEYSFLNCSMSGLSGVEDLDVKSSERFSTDPQAREFMMDRFLPAAKAMASETPHAPKKQPMQVQQQQQP...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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