当前解析结果
SmilChr02G002119| 统一新 Gene ID | SmilChr02G002119 |
|---|---|
| 名称 | SmilChr02G002119 |
| 描述 | heavy metal-associated isoprenylated plant protein 28 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 37953812 - 37955934 / + |
| NCBI Gene ID | LOC131012326 |
|---|---|
| GeneID | 131012326 |
| locus_tag | - |
| NCBI Name | LOC131012326 |
| 原始查询 | SmilChr02G002119 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heavy metal-associated isoprenylated plant protein 28 |
| 产物 | heavy metal-associated isoprenylated plant protein 28 |
| Arabidopsis | AT1G06330 (AT1G06330)Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837144] identity=59.3; qcov=1.08; evalue=4.35e-56; confidence=high |
| Rice | Os01g0758000- identity=49.7; qcov=1.1; evalue=8.76e-42; confidence=medium |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00403 (HMA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012326 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057796250.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057796250.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057796250.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057796250.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796250.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:37954452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr2:37955465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,C37,D4 |
Chr2:37955570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr2:37955599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,A13,B117,C27,C83 |
Chr2:37955608 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | C52 |
Chr2:37955608 |
CA |
C |
1bp_deletion | CDS_variant | 1 | C52 |
Chr2:37955611 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C52 |
Chr2:37955611 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C52 |
Chr2:37955617 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B108,C12,C23,C57 |
Chr2:37955680 |
C |
CTA |
2bp_insertion | frameshift_variant | 4 | A5,B24,C78,D5 |
Chr2:37955680 |
C |
CTA |
2bp_insertion | CDS_variant | 4 | A5,B24,C78,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796250.1PF00403
HMA 7-61 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796250.1 |
Pfam | PF00403 |
HMA | Domain | 7 | 61 | 9.4e-12 | 45.8 | Heavy-metal-associated domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。