Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002123

染色体: Chr02 坐标: 38000514-38005590 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002123
名称SmilChr02G002123
描述uncharacterized SmilChr02G002123
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向38000514 - 38005590 / +

ID 对照

NCBI Gene IDLOC131012311
GeneID131012311
locus_tag-
NCBI NameLOC131012311
原始查询SmilChr02G002123

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817669]; symbol=AT2G31130; hit=AT2G31130; species=arabidopsis; confidence=weak
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817669]; symbol=AT2G31130; hit=AT2G31130; species=arabidopsis; confidence=weak
ArabidopsisAT2G31130 (AT2G31130)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817669]
identity=58.8; qcov=0.192; evalue=7.58e-23; confidence=weak
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131012311

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.40000 XP_057796224.1
2 Nucleus membrane 核膜 0.20000 XP_057796224.1
3 Cell membrane 细胞膜 0.20000 XP_057796224.1
4 Chloroplast membrane 叶绿体膜 0.20000 XP_057796224.1
5 Nucleus 细胞核 0.00000 XP_057796224.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:38002286 C T EMS_canonical_SNV CDS_variant 1 C53
Chr2:38003019 C T EMS_canonical_SNV CDS_variant 5 A18,B104,B65,C10,C53
Chr2:38003146 CCT C 2bp_deletion frameshift_variant 1 B60
Chr2:38003146 CCT C 2bp_deletion CDS_variant 1 B60
Chr2:38003149 ATC A 2bp_deletion frameshift_variant 1 B60
Chr2:38003149 ATC A 2bp_deletion CDS_variant 1 B60
Chr2:38003151 C T EMS_canonical_SNV CDS_variant 1 A9
Chr2:38003426 C T EMS_canonical_SNV CDS_variant 1 C76
Chr2:38003620 G A EMS_canonical_SNV CDS_variant 3 B35,C48,C5
Chr2:38003642 C T EMS_canonical_SNV CDS_variant 2 B65,C53
Chr2:38003682 C T EMS_canonical_SNV CDS_variant 4 B104,B65,C10,C53
Chr2:38003695 G A EMS_canonical_SNV CDS_variant 4 B104,B65,C10,C53

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

12 records

下载 cDNA FASTA
XM_057940244.1
AATAATAATAATATAATCGTTATAAATTTTTTTATTTTATTTCTTTTTTTGTCGCAATTTAAATTTATTTCTAGGGTCAATGAACGGCTTGTACACGTGTCAAGATCCCATGCCGAAAAGAAACCCGATGAACTCAGCCTTTACGTTTATCATTCTTCTACTCAATCCCCTCTCTCTACTCTCTCTCCCTCCCTCTAACTCTCTTTCGCGTATGTTCTTGTATTCTTATGCTCGTTTTATTACTTGTATGTATATCAAAA...
XM_057940251.1
TAGGGTCAATGAACGGCTTGTACACGTGTCAAGATCCCATGCCGAAAAGAAACCCGATGAACTCAGCCTTTACGTTTATCATTCTTCTACTCAATCCCCTCTCTCTACTCTCTCTCCCTCCCTCTAACTCTCTTTCGCCTGTCTAGCCACTTGTCTAGGGAGCGGATATAGAAAGCCGCTTGATATCAACTTCATCCCTTACTATGTCTTTCAAAGGTATAACGTGGGCTGGAAATGTATACGAAAAGTTTGAGGCTATG...

CDS

12 records

下载 CDS FASTA
LOC131012311
ATGTCTTTCAAAGGTATAACGTGGGCTGGAAATGTATACGAAAAGTTTGAGGCTATGTGTTTGGAGGTGGAAGAAGCTATGTACCAGGATACCGTTAAATACGTGGAAAATCAGGTGCAGAAAGTTGGTGTTAGTGTAAAGAAGTTCTATTCAGAAGTGATGGATGATATGCGTCCTCTATCGTGTATAGATCCAACGAGCGTAGCTGATGACTTGTCTCCTATCCCCTATGGTTACACCGATGTCAACAAAAAGCCAAC...
LOC131012311
ATGTCTTTCAAAGGTATAACGTGGGCTGGAAATGTATACGAAAAGTTTGAGGCTATGTGTTTGGAGGTGGAAGAAGCTATGTACCAGGATACCGTTAAATACGTGGAAAATCAGGTGCAGAAAGTTGGTGTTAGTGTAAAGAAGTTCTATTCAGAAGTGATGGATGATATGCGTCCTCTATCGTGTATAGATCCAACGAGCGTAGCTGATGACTTGTCTCCTATCCCCTATGGTTACACCGATGTCAACAAAAAGCCAAC...

Protein

12 records

下载 Protein FASTA
XP_057796224.1
MSFKGITWAGNVYEKFEAMCLEVEEAMYQDTVKYVENQVQKVGVSVKKFYSEVMDDMRPLSCIDPTSVADDLSPIPYGYTDVNKKPTPGILDNRRDLKKKKNDDQVLLNITAEKGSSNVCLFSPQSPGIFIEHKSPEKCAVSKKIGVQRRAIGIKRISKSNYPSKDSCRTTSTSEDKGSKVASCDTRTNSRLASDNMDVTSSSDFAGRCGAREAVKGNAPNLNHSIESPASDEVLLPQSVRQDSLRASSRLASDNMDVTS...
XP_057796225.1
MSFKGITWAGNVYEKFEAMCLEVEEAMYQDTVKYVENQVQKVGVSVKKFYSEVMDDMRPLSCIDPTSVADDLSPIPYGYTDVNKKPTPGILDNRRDLKKKKNDDQVLLNITAEKGSSNVCLFSPQSPGIFIEHKSPEKCAVSKKIGVQRRAIGIKRISKSNYPSKDSCRTTSTSEDKGSKVASCDTRTNSRLASDNMDVTSSSDFAGRCGAREAVKGNAPNLNHSIESPASDEVLLPQSVRQDSLRASSRLASDNMDVTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器