当前解析结果
SmilChr02G002133| 统一新 Gene ID | SmilChr02G002133 |
|---|---|
| 名称 | SmilChr02G002133 |
| 描述 | zinc finger protein NUTCRACKER-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 38384804 - 38386937 / - |
| NCBI Gene ID | LOC131012313 |
|---|---|
| GeneID | 131012313 |
| locus_tag | - |
| NCBI Name | LOC131012313 |
| 原始查询 | SmilChr02G002133 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger protein NUTCRACKER-like |
| 产物 | zinc finger protein NUTCRACKER-like |
| Arabidopsis | AT5G44160 (NUC)C2H2-like zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:834439] identity=51.5; qcov=1.13; evalue=3.12e-133; confidence=high |
| Rice | Os01g0242200 (OsIDD8)- identity=54.1; qcov=1; evalue=8.25e-127; confidence=high |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus) |
| KEGG | - |
| Pfam | PF00096 (zf-C2H2); PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012313 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796237.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057796237.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057796237.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057796237.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057796237.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:38385338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,B83 |
Chr2:38385368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A7,B81,C74,C85 |
Chr2:38385462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B127,C53 |
Chr2:38385526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,C37,D4 |
Chr2:38385620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B81,C74,C85 |
Chr2:38385647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr2:38385659 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B40 |
Chr2:38385659 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B40 |
Chr2:38385662 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B40 |
Chr2:38385662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr2:38386191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796237.1PF00096
zf-C2H2 52-74 aa
PF22996
C2H2-2nd_BIRD-IDD 89-123 aa
PF22995
C2CH-3rd_BIRD-IDD 127-151 aa
PF22992
C2CH-4th_BIRD-IDD 154-192 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796237.1 |
Pfam | PF00096 |
zf-C2H2 | Domain | 52 | 74 | 9.8e-06 | 26.5 | Zinc finger, C2H2 type |
XP_057796237.1 |
Pfam | PF22996 |
C2H2-2nd_BIRD-IDD | Family | 89 | 123 | 7.1e-21 | 74.7 | BIRD-IDD transcription factor, second C2H2 zinc finger |
XP_057796237.1 |
Pfam | PF22995 |
C2CH-3rd_BIRD-IDD | Domain | 127 | 151 | 8.5e-15 | 54.9 | BIRD-IDD transcription factor, third C2HC zinc finger |
XP_057796237.1 |
Pfam | PF22992 |
C2CH-4th_BIRD-IDD | Domain | 154 | 192 | 1.9e-22 | 79.5 | BIRD-IDD transcription factor, fourth C2HC zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。