当前解析结果
SmilChr02G002144| 统一新 Gene ID | SmilChr02G002144 |
|---|---|
| 名称 | SmilChr02G002144 |
| 描述 | uncharacterized SmilChr02G002144 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 38567920 - 38571160 / + |
| NCBI Gene ID | LOC131012323 |
|---|---|
| GeneID | 131012323 |
| locus_tag | - |
| NCBI Name | LOC131012323 |
| 原始查询 | SmilChr02G002144 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | proteophosphoglycan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:824633]; symbol=AT3G54680; hit=AT3G54680; species=arabidopsis; confidence=medium |
| 产物 | proteophosphoglycan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:824633]; symbol=AT3G54680; hit=AT3G54680; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G54680 (AT3G54680)proteophosphoglycan-like protein [Source:NCBI gene (formerly Entrezgene);Acc:824633] identity=38.8; qcov=1.03; evalue=3.76e-23; confidence=medium |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012323 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796247.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057796247.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796247.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796247.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796247.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:38568523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr2:38568665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B7,B78 |
Chr2:38568682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:38568686 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B114,B115,B126,B70 |
Chr2:38568781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,B65 |
Chr2:38568838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,B91,C58 |
Chr2:38568862 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr2:38568913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr2:38568969 |
GT |
G |
1bp_deletion | frameshift_variant | 146 | A10,A11,A15,A18,A19,A20,A21,A22,A24,A5,A6,A7,A8,B1,B10,B100,B102,B103,B105,B11,B110,B113,B119,B12,B121,B123,B126,B127,B128,B13,B130,B132,B134,B136,B137,B138,B139,B140,B16,B17,B18,B19,B2,B20,B21,B22,B23,B25,B27,B29,B30,B34,B38,B39,B40,B44,B45,B48,B49,B52,B53,B54,B55,B56,B58,B59,B60,B62,B63,B65,B66,B68,B7,B70,B71,B75,B76,B78,B79,B82,B84,B85,B86,B9,B90,B91,B92,B96,B97,B99,C1,C10,C11,C12,C13,C19,C2,C20,C21,C24,C25,C28,C3,C30,C31,C32,C33,C34,C35,C36,C38,C39,C4,C40,C41,C43,C44,C45,C49,C52,C54,C56,C59,C6,C63,C67,C68,C69,C71,C72,C73,C74,C75,C78,C80,C81,C82,C83,C84,C87,C9,D1,D5,D6,D8,D9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。