当前解析结果
SmilChr02G002176| 统一新 Gene ID | SmilChr02G002176 |
|---|---|
| 名称 | SmilChr02G002176 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 38980129 - 38984185 / - |
| NCBI Gene ID | LOC131012366 |
|---|---|
| GeneID | 131012366 |
| locus_tag | - |
| NCBI Name | LOC131012366 |
| 原始查询 | SmilChr02G002176 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 |
| Arabidopsis | AT1G11330 (AT1G11330)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837675] identity=56.1; qcov=0.612; evalue=2.81e-148; confidence=high |
| Rice | Os11g0681400 (OsRLCK352)- identity=54.7; qcov=0.502; evalue=2.45e-128; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF11883 (DUF3403); PF13947 (GUB_WAK_bind); PF14380 (WAK_assoc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012366 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796280.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796280.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796280.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796280.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796280.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:38980622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr2:38981086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C14 |
Chr2:38981565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
Chr2:38982062 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B32,B72,C74 |
Chr2:38983032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B119,D1 |
Chr2:38983067 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B111 |
Chr2:38983124 |
GCC |
G |
2bp_deletion | frameshift_variant | 6 | B105,B114,B31,B70,C12,D11 |
Chr2:38983164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:38983188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B108,B112,B95,C12 |
Chr2:38983370 |
G |
GA |
1bp_insertion | frameshift_variant | 38 | A11,A13,A3,A5,B108,B13,B130,B133,B19,B24,B37,B4,B46,B50,B6,B61,B72,B84,B87,B94,B99,C10,C16,C20,C26,C28,C36,C43,C5,C51,C55,C57,C60,C74,C75,C81,D3,D8 |
Chr2:38983377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B109,B65,D11 |
Chr2:38983427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796280.1PF13947
GUB_WAK_bind 27-91 aa
PF14380
WAK_assoc 175-240 aa
PF00069
Pkinase 344-546 aa
PF07714
PK_Tyr_Ser-Thr 346-544 aa
PF11883
DUF3403 617-656 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796280.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 27 | 91 | 1.2e-15 | 58.3 | Wall-associated receptor kinase galacturonan-binding |
XP_057796280.1 |
Pfam | PF14380 |
WAK_assoc | Domain | 175 | 240 | 2.5e-11 | 44.9 | Wall-associated receptor kinase C-terminal |
XP_057796280.1 |
Pfam | PF00069 |
Pkinase | Domain | 344 | 546 | 5.4e-48 | 164.4 | Protein kinase domain |
XP_057796280.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 346 | 544 | 1.5e-48 | 166.1 | Protein tyrosine and serine/threonine kinase |
XP_057796280.1 |
Pfam | PF11883 |
DUF3403 | Family | 617 | 656 | 2.3e-08 | 34.8 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。