当前解析结果
SmilChr02G002177| 统一新 Gene ID | SmilChr02G002177 |
|---|---|
| 名称 | SmilChr02G002177 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 38991661 - 39000094 / - |
| NCBI Gene ID | LOC131012363 |
|---|---|
| GeneID | 131012363 |
| locus_tag | - |
| NCBI Name | LOC131012363 |
| 原始查询 | SmilChr02G002177 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 |
| Arabidopsis | AT1G11300 (AT1G11300)G-type lectin S-receptor-like Serine/Threonine-kinase [Source:NCBI gene (formerly Entrezgene);Acc:837672] identity=47.3; qcov=1.05; evalue=0; confidence=high |
| Rice | Os01g0783800- identity=41.8; qcov=1.07; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2); PF11883 (DUF3403) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012363 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796271.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796271.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796271.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796271.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796271.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:38992107 |
AT |
A |
1bp_deletion | frameshift_variant | 11 | B11,B133,B34,B69,B75,B85,B88,C15,C51,C77,D3 |
Chr2:38992361 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B32,B37,B6,C63 |
Chr2:38992417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,B83 |
Chr2:38992426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,C8,D11 |
Chr2:38992625 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | B82 |
Chr2:38992625 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | B82 |
Chr2:38992657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,B6 |
Chr2:38992720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr2:38992767 |
GA |
G |
1bp_deletion | frameshift_variant | 7 | A24,B102,B31,B50,C53,C60,C86 |
Chr2:38992897 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:38993053 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B98,C1,C28 |
Chr2:38993534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B100,B127,B7,B78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796271.1PF01453
B_lectin 73-172 aa
PF00954
S_locus_glycop 205-314 aa
PF08276
PAN_2 343-401 aa
PF00069
Pkinase 463-663 aa
PF07714
PK_Tyr_Ser-Thr 463-727 aa
PF11883
DUF3403 733-777 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796271.1 |
Pfam | PF01453 |
B_lectin | Repeat | 73 | 172 | 2.7e-30 | 105.6 | D-mannose binding lectin |
XP_057796271.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 205 | 314 | 6.7e-29 | 101.4 | S-locus glycoprotein domain |
XP_057796271.1 |
Pfam | PF08276 |
PAN_2 | Domain | 343 | 401 | 2.4e-15 | 57.1 | PAN-like domain |
XP_057796271.1 |
Pfam | PF00069 |
Pkinase | Domain | 463 | 663 | 6.4e-46 | 157.6 | Protein kinase domain |
XP_057796271.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 463 | 727 | 8e-50 | 170.3 | Protein tyrosine and serine/threonine kinase |
XP_057796271.1 |
Pfam | PF11883 |
DUF3403 | Family | 733 | 777 | 3.4e-11 | 43.8 | Domain of unknown function (DUF3403) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。