Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002180`

染色体: Chr02 坐标: 39014425-39017746 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002180`
名称	SmilChr02G002180
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	39014425 - 39017746 / `-`

ID 对照

NCBI Gene ID	`LOC131012365`
GeneID	`131012365`
locus_tag	`-`
NCBI Name	`LOC131012365`
原始查询	`SmilChr02G002180`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300
Arabidopsis	`AT1G11330` (AT1G11330) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837675] identity=49.2; qcov=0.993; evalue=0; confidence=high
Rice	`Os01g0783800` - identity=42.5; qcov=1.03; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131012365

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057796278.1`
2	Nucleus	细胞核	0.00000	`XP_057796278.1`
3	Chromosome	染色体	0.00000	`XP_057796278.1`
4	Centromere	着丝粒	0.00000	`XP_057796278.1`
5	Chromatin	染色质	0.00000	`XP_057796278.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:39014741`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:39014780`	`G`	`A`	EMS_canonical_SNV	stop_gained	24	A13,A2,A9,B107,B112,B117,B139,B140,B2,B3,B4,B41,B66,B80,B82,B95,B97,B98,C27,C53,C61,C72,D10,D7
`Chr2:39014851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,A9,B107,B140,C72
`Chr2:39014853`	`CAG`	`C`	2bp_deletion	frameshift_variant	1	D10
`Chr2:39014853`	`CAG`	`C`	2bp_deletion	CDS_variant	1	D10
`Chr2:39014855`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A13,B112,B117,B98
`Chr2:39014866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr2:39014886`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B83,C15,C71
`Chr2:39015426`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B53,B64,C17,C43,C60
`Chr2:39015513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B53,B64,C43,C60
`Chr2:39015565`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B14
`Chr2:39015565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796278.1

809 aa

404

809

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 73-174 aa PF00954 S_locus_glycop 207-316 aa PF08276 PAN_2 345-403 aa PF00069 Pkinase 497-697 aa PF07714 PK_Tyr_Ser-Thr 498-698 aa

XP_057796279.1

808 aa

404

808

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 73-174 aa PF00954 S_locus_glycop 207-316 aa PF08276 PAN_2 345-403 aa PF00069 Pkinase 496-696 aa PF07714 PK_Tyr_Ser-Thr 497-697 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796278.1`	Pfam	`PF01453`	B_lectin	Repeat	73	174	5.9e-31	107.8	D-mannose binding lectin
`XP_057796278.1`	Pfam	`PF00954`	S_locus_glycop	Domain	207	316	3.2e-29	102.4	S-locus glycoprotein domain
`XP_057796278.1`	Pfam	`PF08276`	PAN_2	Domain	345	403	6.4e-14	52.5	PAN-like domain
`XP_057796278.1`	Pfam	`PF00069`	Pkinase	Domain	497	697	1.4e-45	156.5	Protein kinase domain
`XP_057796278.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	498	698	6.3e-49	167.3	Protein tyrosine and serine/threonine kinase
`XP_057796279.1`	Pfam	`PF01453`	B_lectin	Repeat	73	174	5.9e-31	107.8	D-mannose binding lectin
`XP_057796279.1`	Pfam	`PF00954`	S_locus_glycop	Domain	207	316	3.2e-29	102.4	S-locus glycoprotein domain
`XP_057796279.1`	Pfam	`PF08276`	PAN_2	Domain	345	403	6.8e-14	52.4	PAN-like domain
`XP_057796279.1`	Pfam	`PF00069`	Pkinase	Domain	496	696	1.4e-45	156.5	Protein kinase domain
`XP_057796279.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	497	697	6.3e-49	167.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940296.1
AGAACACAAATAGACTAACTCATGGGGTTCAGCCACTACAGAAACATGCCATGTTATGTGTTCATGTTGTCTTGTTTCTTTATGTATTCTGCAGCCATCCACACCATAAGAACTAATGAGTCTCTCAGGGATTCAGAAGTTTTGATTTCCGATGGAAATATATTCAAGTTGAGTTTTTTCAGCCCACCAAATAGCAGTCGCCGTTACCTCGGTGTCATGTACAATCTCCCGGTGATGACTGTAGTATGGGTAGCTAATAG...

XM_057940295.1
AGAACACAAATAGACTAACTCATGGGGTTCAGCCACTACAGAAACATGCCATGTTATGTGTTCATGTTGTCTTGTTTCTTTATGTATTCTGCAGCCATCCACACCATAAGAACTAATGAGTCTCTCAGGGATTCAGAAGTTTTGATTTCCGATGGAAATATATTCAAGTTGAGTTTTTTCAGCCCACCAAATAGCAGTCGCCGTTACCTCGGTGTCATGTACAATCTCCCGGTGATGACTGTAGTATGGGTAGCTAATAG...

CDS

2 records

下载 CDS FASTA

LOC131012365
ATGGGGTTCAGCCACTACAGAAACATGCCATGTTATGTGTTCATGTTGTCTTGTTTCTTTATGTATTCTGCAGCCATCCACACCATAAGAACTAATGAGTCTCTCAGGGATTCAGAAGTTTTGATTTCCGATGGAAATATATTCAAGTTGAGTTTTTTCAGCCCACCAAATAGCAGTCGCCGTTACCTCGGTGTCATGTACAATCTCCCGGTGATGACTGTAGTATGGGTAGCTAATAGAAATAAACCTCTGAATGATTC...

Protein

2 records

下载 Protein FASTA

XP_057796278.1
MGFSHYRNMPCYVFMLSCFFMYSAAIHTIRTNESLRDSEVLISDGNIFKLSFFSPPNSSRRYLGVMYNLPVMTVVWVANRNKPLNDSSGTFQISSDGNLVILDGRKEIVWSTNLLTSVVNTRAVLLDTGNLVLRDDSNNVSVWESFQRASDSWLEKMKIATDLSRKEKNLLTSWTSPDDPAPGRFTFTIEPLDVPQSFIWKDGNPYWRTGPWNGQIFTGLPYMSSAYGYGVKVVTDSPETANLILTLTNSSVLVHIFLNS...

XP_057796279.1
MGFSHYRNMPCYVFMLSCFFMYSAAIHTIRTNESLRDSEVLISDGNIFKLSFFSPPNSSRRYLGVMYNLPVMTVVWVANRNKPLNDSSGTFQISSDGNLVILDGRKEIVWSTNLLTSVVNTRAVLLDTGNLVLRDDSNNVSVWESFQRASDSWLEKMKIATDLSRKEKNLLTSWTSPDDPAPGRFTFTIEPLDVPQSFIWKDGNPYWRTGPWNGQIFTGLPYMSSAYGYGVKVVTDSPETANLILTLTNSSVLVHIFLNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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