当前解析结果
SmilChr02G002210| 统一新 Gene ID | SmilChr02G002210 |
|---|---|
| 名称 | SmilChr02G002210 |
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 39353126 - 39355654 / + |
| NCBI Gene ID | LOC131012388 |
|---|---|
| GeneID | 131012388 |
| locus_tag | - |
| NCBI Name | LOC131012388 |
| 原始查询 | SmilChr02G002210 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| 产物 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=31.1; qcov=0.893; evalue=2.61e-96; confidence=low |
| Rice | Os03g0733400- identity=33.5; qcov=0.992; evalue=2.01e-122; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012388 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796301.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057796301.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057796301.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057796301.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057796301.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:39353197 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C66 |
Chr2:39353311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr2:39353319 |
TG |
T |
1bp_deletion | frameshift_variant | 5 | B110,B30,C27,C28,C67 |
Chr2:39353319 |
TG |
T |
1bp_deletion | CDS_variant | 5 | B110,B30,C27,C28,C67 |
Chr2:39353330 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B110,B30,C27,C28,C67 |
Chr2:39353347 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A9,B3,C12,C23,C35,C86 |
Chr2:39353352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B47,B78,C33,C60 |
Chr2:39353376 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B87 |
Chr2:39353381 |
GGA |
G |
2bp_deletion | frameshift_variant | 5 | B114,C12,C23,C50,C86 |
Chr2:39353381 |
GGA |
G |
2bp_deletion | CDS_variant | 5 | B114,C12,C23,C50,C86 |
Chr2:39353411 |
T |
TAA |
2bp_insertion | frameshift_variant | 1 | B1 |
Chr2:39353411 |
T |
TAA |
2bp_insertion | CDS_variant | 1 | B1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796301.1PF27041
ZBED1_RNase-like 230-327 aa
PF27039
ZBED1_RNase-like_helical 330-437 aa
PF14372
hAT-like_RNase-H 459-551 aa
PF05699
Dimer_Tnp_hAT 606-694 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796301.1 |
Pfam | PF27041 |
ZBED1_RNase-like | Domain | 230 | 327 | 1.8e-29 | 102.4 | ZBED1 RNase-like domain |
XP_057796301.1 |
Pfam | PF27039 |
ZBED1_RNase-like_helical | Domain | 330 | 437 | 3.9e-30 | 104.9 | ZBED1 RNase-like helical domain |
XP_057796301.1 |
Pfam | PF14372 |
hAT-like_RNase-H | Domain | 459 | 551 | 2.9e-27 | 95.5 | hAT-like transposase, RNase-H fold |
XP_057796301.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 606 | 694 | 2.4e-24 | 85.7 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。