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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002211

染色体: Chr02 坐标: 39358822-39361296 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002211
名称SmilChr02G002211
描述equilibrative nucleotide transporter 3-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向39358822 - 39361296 / +

ID 对照

NCBI Gene IDLOC131012389
GeneID131012389
locus_tag-
NCBI NameLOC131012389
原始查询SmilChr02G002211

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述equilibrative nucleotide transporter 3-like
产物equilibrative nucleotide transporter 3-like
ArabidopsisAT4G05120 (FUR1)
Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825857]
identity=72.3; qcov=0.971; evalue=0; confidence=high
RiceOs07g0557100
-
identity=69; qcov=0.974; evalue=0; confidence=high
GOGO:0005337 (nucleoside transmembrane transporter activity); GO:0005886 (plasma membrane); GO:1901642 (nucleoside transmembrane transport)
KEGGsmil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
PfamPF01733 (Nucleoside_tran)
InterPro-
eggNOG-
NRGeneID:131012389

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057796302.1
2 Vacuole 液泡 0.60000 XP_057796302.1
3 Vacuole membrane 液泡膜 0.40000 XP_057796302.1
4 Nucleus 细胞核 0.00000 XP_057796302.1
5 Chromosome 染色体 0.00000 XP_057796302.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:39360354 GAA G 2bp_deletion frameshift_variant 1 B19
Chr2:39360354 GAA G 2bp_deletion CDS_variant 1 B19
Chr2:39360459 G A EMS_canonical_SNV CDS_variant 5 B100,B140,B78,C28,C70
Chr2:39360795 G A EMS_canonical_SNV CDS_variant 1 A24
Chr2:39360878 G A EMS_canonical_SNV CDS_variant 2 B26,C5
Chr2:39361076 G A EMS_canonical_SNV CDS_variant 2 A6,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796302.1
426 aa
N
1
213
426
Nucleoside_tran
C
PF01733 Nucleoside_tran 128-419 aa
XP_057796303.1
426 aa
N
1
213
426
Nucleoside_tran
C
PF01733 Nucleoside_tran 128-419 aa
XP_057796305.1
426 aa
N
1
213
426
Nucleoside_tran
C
PF01733 Nucleoside_tran 128-419 aa
XP_057796306.1
426 aa
N
1
213
426
Nucleoside_tran
C
PF01733 Nucleoside_tran 128-419 aa
XP_057796307.1
425 aa
N
1
212
425
Nucleoside_tran
C
PF01733 Nucleoside_tran 127-418 aa
XP_057796308.1
425 aa
N
1
212
425
Nucleoside_tran
C
PF01733 Nucleoside_tran 127-418 aa
XP_057796309.1
425 aa
N
1
212
425
Nucleoside_tran
C
PF01733 Nucleoside_tran 127-418 aa
XP_057796310.1
425 aa
N
1
212
425
Nucleoside_tran
C
PF01733 Nucleoside_tran 127-418 aa
XP_057796311.1
421 aa
N
1
210
421
Nucleoside_tran
C
PF01733 Nucleoside_tran 128-414 aa
XP_057796312.1
421 aa
N
1
210
421
Nucleoside_tran
C
PF01733 Nucleoside_tran 128-414 aa
XP_057796313.1
420 aa
N
1
210
420
Nucleoside_tran
C
PF01733 Nucleoside_tran 127-413 aa
XP_057796314.1
420 aa
N
1
210
420
Nucleoside_tran
C
PF01733 Nucleoside_tran 127-413 aa
XP_057796315.1
420 aa
N
1
210
420
Nucleoside_tran
C
PF01733 Nucleoside_tran 127-413 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796302.1 Pfam PF01733 Nucleoside_tran Family 128 419 1.3e-29 104.3 Nucleoside transporter
XP_057796303.1 Pfam PF01733 Nucleoside_tran Family 128 419 1.3e-29 104.3 Nucleoside transporter
XP_057796305.1 Pfam PF01733 Nucleoside_tran Family 128 419 1.3e-29 104.3 Nucleoside transporter
XP_057796306.1 Pfam PF01733 Nucleoside_tran Family 128 419 1.3e-29 104.3 Nucleoside transporter
XP_057796307.1 Pfam PF01733 Nucleoside_tran Family 127 418 2.6e-29 103.3 Nucleoside transporter
XP_057796308.1 Pfam PF01733 Nucleoside_tran Family 127 418 2.6e-29 103.3 Nucleoside transporter
XP_057796309.1 Pfam PF01733 Nucleoside_tran Family 127 418 2.6e-29 103.3 Nucleoside transporter
XP_057796310.1 Pfam PF01733 Nucleoside_tran Family 127 418 2.6e-29 103.3 Nucleoside transporter
XP_057796311.1 Pfam PF01733 Nucleoside_tran Family 128 414 6.4e-29 102.0 Nucleoside transporter
XP_057796312.1 Pfam PF01733 Nucleoside_tran Family 128 414 6.4e-29 102.0 Nucleoside transporter
XP_057796313.1 Pfam PF01733 Nucleoside_tran Family 127 413 1.3e-28 101.1 Nucleoside transporter
XP_057796314.1 Pfam PF01733 Nucleoside_tran Family 127 413 1.3e-28 101.1 Nucleoside transporter
XP_057796315.1 Pfam PF01733 Nucleoside_tran Family 127 413 1.3e-28 101.1 Nucleoside transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

13 records

下载 cDNA FASTA
XM_057940319.1
TGGAAACGCTACATTCAAGGAAACGTAATGAATGATTCCGTCATATAATGGGAAAACGCAATGAAAATTATTCTAGTATATCTTTTCCTCATTTACTGCCACACAGAATCTTAATTTAATTTCAATATTTCAGCCACATTTTATTGCCCGTGTTTTCAAAAATCTGAACACTCTTTCTAGTTCTTCCCATTTGGCAGCTGTTCAAAAGTTGACTCAATTTCAAGGATTTTGTTTTTTTTGGAGGAGCAGCAATGAGTAAT...
XM_057940328.1
TGGAAACGCTACATTCAAGGAAACGTAATGAATGATTCCGTCATATAATGGGAAAACGCAATGAAAATTATTCTAGTATATCTTTTCCTCATTTACTGCCACACAGAATCTTAATTTAATTTCAATATTTCAGCCACATTTTATTGCCCGTGTTTTCAAAAATCTGAACACTCTTTCTAGTTCTTCCCATTTGGCAGCTGTTCAAAAGTTGACTCAATTTCAAGGATTTTGTTTTTTTTGGAGGAGCAGCAATGAGTAAT...

CDS

13 records

下载 CDS FASTA
LOC131012389
ATGAGTAATGGAGAATCAAGCATCGTCACAGCTCCTACCAGGATTGAGCAGGGGAAGTCTAAGGCAATGGTGGTTTGTTTTTTTCTTGGACTCGGATCTCTCGTCTCATGGAATAGTATGCTAACAATTAGTGATTATTACTATCAAATTTTCCCAGATTACCATCCTGCAAGAGTACTCACTCTAGTTTATCAGCCATTTGCACTTGGATCAATGGCGATTCTTGCTTACAAAGAGGCCAAGATCGATACAAGGAAACG...
LOC131012389
ATGAGTAATGGAGAATCAAGCATCGTCACAGCTCCTACCAGGATTGAGCAGGGGAAGTCTAAGGCAATGGTGGTTTGTTTTTTTCTTGGACTCGGATCTCTCGTCTCATGGAATAGTATGCTAACAATTAGTGATTATTACTATCAAATTTTCCCAGATTACCATCCTGCAAGAGTACTCACTCTAGTTTATCAGCCATTTGCACTTGGATCAATGGCGATTCTTGCTTACAAAGAGGCCAAGATCGATACAAGGAAACG...

Protein

13 records

下载 Protein FASTA
XP_057796302.1
MSNGESSIVTAPTRIEQGKSKAMVVCFFLGLGSLVSWNSMLTISDYYYQIFPDYHPARVLTLVYQPFALGSMAILAYKEAKIDTRKRNIFGYTLFCISTFALLLIDIATSGRGGIGNYIGVCVFVAGFGIADAHVQGGMVGDLSFMCPEFMQSFFAGLAASGALTSGLRLVTKAAFDKTDNGLRKGVMLFLAISTFCEFLCILLYAFVFGKLPIVKHFRRKAASEGSKTVSADLAAAGIKTGDGEILLLLQVDDVKQDRL...
XP_057796303.1
MSNGESSIVTAPTRIEQGKSKAMVVCFFLGLGSLVSWNSMLTISDYYYQIFPDYHPARVLTLVYQPFALGSMAILAYKEAKIDTRKRNIFGYTLFCISTFALLLIDIATSGRGGIGNYIGVCVFVAGFGIADAHVQGGMVGDLSFMCPEFMQSFFAGLAASGALTSGLRLVTKAAFDKTDNGLRKGVMLFLAISTFCEFLCILLYAFVFGKLPIVKHFRRKAASEGSKTVSADLAAAGIKTGDGEILLLLQVDDVKQDRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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