当前解析结果
SmilChr02G002226| 统一新 Gene ID | SmilChr02G002226 |
|---|---|
| 名称 | SmilChr02G002226 |
| 描述 | sugar carrier protein C-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 39594712 - 39611304 / - |
| NCBI Gene ID | LOC131012404 |
|---|---|
| GeneID | 131012404 |
| locus_tag | - |
| NCBI Name | LOC131012404 |
| 原始查询 | SmilChr02G002226 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sugar carrier protein C-like |
| 产物 | sugar carrier protein C-like |
| Arabidopsis | AT1G11260 (STP1)sugar transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:837667] identity=69.1; qcov=0.961; evalue=0; confidence=high |
| Rice | Os07g0106200 (OsMST3)- identity=60.7; qcov=0.959; evalue=3.43e-166; confidence=high |
| GO | GO:0015145 (monosaccharide transmembrane transporter activity); GO:0015749 (monosaccharide transmembrane transport); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012404 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796340.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796340.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796340.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796340.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796340.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:39594995 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B67 |
Chr2:39594995 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B67 |
Chr2:39595462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,C86 |
Chr2:39595488 |
CA |
C |
1bp_deletion | frameshift_variant | 45 | A1,A14,A16,A18,A2,B1,B104,B105,B106,B11,B112,B122,B123,B16,B17,B2,B30,B36,B45,B47,B51,B55,B81,B82,B84,B87,B89,B90,B92,B95,C12,C16,C20,C30,C33,C34,C56,C60,C61,C65,C8,C81,D1,D11,D6 |
Chr2:39595491 |
AG |
A |
1bp_deletion | frameshift_variant | 45 | A1,A14,A16,A18,A2,B1,B104,B105,B106,B11,B112,B122,B123,B16,B17,B2,B30,B36,B45,B47,B51,B55,B81,B82,B84,B87,B89,B90,B92,B95,C12,C16,C20,C30,C33,C34,C56,C60,C61,C65,C8,C81,D1,D11,D6 |
Chr2:39595511 |
T |
TGA |
2bp_insertion | frameshift_variant | 1 | A24 |
Chr2:39595511 |
T |
TGA |
2bp_insertion | CDS_variant | 1 | A24 |
Chr2:39595539 |
G |
GAC |
2bp_insertion | frameshift_variant | 83 | A10,A14,A21,A22,A23,A24,A25,A3,A4,A7,B101,B102,B113,B118,B12,B120,B121,B127,B128,B13,B130,B135,B136,B139,B15,B21,B23,B25,B28,B29,B38,B39,B4,B41,B42,B43,B46,B50,B53,B54,B56,B61,B63,B64,B76,B80,B81,B82,B96,B97,B98,B99,C11,C13,C18,C20,C26,C27,C29,C36,C4,C40,C42,C43,C44,C45,C47,C48,C49,C50,C51,C55,C59,C6,C60,C61,C69,C72,C80,C84,C9,D1,D4 |
Chr2:39595569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,B135,B140,B91,D7 |
Chr2:39595750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:39595752 |
T |
TG |
1bp_insertion | frameshift_variant | 3 | B112,D1,D11 |
Chr2:39595752 |
T |
TG |
1bp_insertion | CDS_variant | 3 | B112,D1,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796340.1PF00083
Sugar_tr 31-411 aa
PF07690
MFS_1 83-408 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796340.1 |
Pfam | PF00083 |
Sugar_tr | Family | 31 | 411 | 3.4e-102 | 343.4 | Sugar (and other) transporter |
XP_057796340.1 |
Pfam | PF07690 |
MFS_1 | Family | 83 | 408 | 6.3e-26 | 91.8 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。