当前解析结果
SmilChr02G002239| 统一新 Gene ID | SmilChr02G002239 |
|---|---|
| 名称 | SmilChr02G002239 |
| 描述 | premnaspirodiene oxygenase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 39736324 - 39742802 / + |
| NCBI Gene ID | LOC131012417 |
|---|---|
| GeneID | 131012417 |
| locus_tag | - |
| NCBI Name | LOC131012417 |
| 原始查询 | SmilChr02G002239 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | premnaspirodiene oxygenase-like |
| 产物 | premnaspirodiene oxygenase-like |
| Arabidopsis | AT3G26310 (CYP71B35)cytochrome P450, family 71, subfamily B, polypeptide 35 [Source:NCBI gene (formerly Entrezgene);Acc:822235] identity=40.6; qcov=1.01; evalue=2.92e-115; confidence=medium |
| Rice | Os01g0377000- identity=40.7; qcov=0.947; evalue=1.19e-126; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012417 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057796352.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057796352.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796352.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796352.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796352.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:39740488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B57 |
Chr2:39740590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C80 |
Chr2:39740618 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B12 |
Chr2:39740618 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B12 |
Chr2:39740627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr2:39740632 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | D6 |
Chr2:39740632 |
CT |
C |
1bp_deletion | CDS_variant | 1 | D6 |
Chr2:39740796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C80 |
Chr2:39740947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C80 |
Chr2:39740952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B17,B3,B38 |
Chr2:39740974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B17,B3,B38 |
Chr2:39740976 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A8,B17,B3,B38 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796352.1PF00067
p450 41-485 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796352.1 |
Pfam | PF00067 |
p450 | Domain | 41 | 485 | 3.8e-95 | 320.1 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。