Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002246`

染色体: Chr02 坐标: 39895702-39906559 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002246`
名称	SmilChr02G002246
描述	splicing factor U2af large subunit A-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	39895702 - 39906559 / `+`

ID 对照

NCBI Gene ID	`LOC131011149`
GeneID	`131011149`
locus_tag	`-`
NCBI Name	`LOC131011149`
原始查询	`SmilChr02G002246`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	splicing factor U2af large subunit A-like
产物	splicing factor U2af large subunit A-like
Arabidopsis	`AT1G60900` (AT1G60900) U2 snRNP auxilliary factor, large subunit, splicing factor [Source:NCBI gene (formerly Entrezgene);Acc:842382] identity=68.2; qcov=0.995; evalue=0; confidence=high
Rice	`Os11g0636900` (U2AF65A) - identity=63.6; qcov=0.997; evalue=9.37e-173; confidence=high
GO	GO:0000243 (commitment complex); GO:0005634 (nucleus); GO:0006397 (mRNA processing); GO:0008187 (poly-pyrimidine tract binding); GO:0016607 (nuclear speck); GO:0030628 (pre-mRNA 3'-splice site binding); GO:0071004 (U2-type prespliceosome); GO:0089701 (U2AF complex)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:131011149

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794926.1`
2	Cytoplasm	细胞质	0.80000	`XP_057794927.1`
3	Nucleoplasm	核质	0.60000	`XP_057794926.1`
4	Nuclear speckle	核斑点	0.40000	`XP_057794926.1`
5	Cytoplasmic granule	细胞质颗粒	0.20000	`XP_057794927.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:39896996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,D3
`Chr2:39897283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,D5
`Chr2:39899344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B127,B62,C32,D10
`Chr2:39899353`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:39902372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr2:39902912`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B51,D3
`Chr2:39903172`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:39905248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C7,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794926.1

524 aa

262

524

RRM_1

PF00076 RRM_1 178-249 aa PF00076 RRM_1 298-367 aa

XP_057794927.1

386 aa

193

386

RRM_1

PF00076 RRM_1 40-111 aa PF00076 RRM_1 160-229 aa

XP_057794928.1

386 aa

193

386

RRM_1

PF00076 RRM_1 40-111 aa PF00076 RRM_1 160-229 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794926.1`	Pfam	`PF00076`	RRM_1	Domain	178	249	3.1e-30	104.6	RNA recognition motif
`XP_057794926.1`	Pfam	`PF00076`	RRM_1	Domain	298	367	3.1e-30	104.6	RNA recognition motif
`XP_057794927.1`	Pfam	`PF00076`	RRM_1	Domain	40	111	6.2e-31	106.8	RNA recognition motif
`XP_057794927.1`	Pfam	`PF00076`	RRM_1	Domain	160	229	6.2e-31	106.8	RNA recognition motif
`XP_057794928.1`	Pfam	`PF00076`	RRM_1	Domain	40	111	6.2e-31	106.8	RNA recognition motif
`XP_057794928.1`	Pfam	`PF00076`	RRM_1	Domain	160	229	6.2e-31	106.8	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057938943.1
TATGACTACAAAGGAAACAAGTCAATAAAAAATAAAATCAGAAAGATTTGAGTTTGTGTCATAAATTGATAACAAGTCGAAGCGTGAAATTGGCTGAGGAGAGAGGAAGGAGTTTTCCAAACACGCGATAATTCTCGAGTGTATATTTGATCGCGTTCCAATTAGAATTGGGAATTAGGGTTCATCGATGCCTCGCCACGGTAGAGAAGACGATCGCAGGAGATCGTTGCCTTACGATGATTCCTCGAGAGATCGGCGTT...

XM_057938945.1
ATACTATAAACATGGTGTGGACGGAGAAAAACAACATAGACAGAGGTCACCCAGCCAATCAGATGATAAATCTCACAGCAAGCGAACAAGTGGGTTTGATGTGGCTCCACCTGCTAATGGTGCTTTGCCAAGTCCTTCAGAAGGAAAAATCGCTATGCTTCTCATGGGTGTGAGAGATGTAGAATATATGCCACCAAGGAATCGATGCTCCAGTAGCAGGATCTTTTCATCTTCAACTGCAACTGTTGTTATTTGGTAGA...

CDS

3 records

下载 CDS FASTA

LOC131011149
ATGCCTCGCCACGGTAGAGAAGACGATCGCAGGAGATCGTTGCCTTACGATGATTCCTCGAGAGATCGGCGTTCCCATCACCACAAGCACAAAGATCATGGTTCGGACGACAAGGGATTCAAGAGAACAGACTGGAATCGAGATGGGGAGAGAGATCGATACCATAAGCAAGATGGTCAGAGAACTTCAAGATCTTATGGGGGAAGAAGTAGAAATGATGATTATGGAGATAGGCGAAACCAGGAATCTAGCAGATACTA...

LOC131011149
ATGGCGTCTCAAGCAATTCCTGGAATGTTGCAAAACATGCTTACTTCTGAGACATCTCAGTTAGGATTGTTCCCAATTCAAGTCATGACTCAGCAGGCTACAAGGCATGCACGTAGAGTATATGTTGGTGGCCTTCCACCTTTGGCTAATGAGCAGACTATCTCAACATTTTTCAGCCATGTTATGAATGCAATCGGTGGAAACATTGCTGGTCCTGGTGATGCGGTCGTGAATGTTTACATTAATCATGAAAAGAAATT...

Protein

3 records

下载 Protein FASTA

XP_057794926.1
MPRHGREDDRRRSLPYDDSSRDRRSHHHKHKDHGSDDKGFKRTDWNRDGERDRYHKQDGQRTSRSYGGRSRNDDYGDRRNQESSRYYKHGVDGEKQHRQRSPSQSDDKSHSKRTSGFDVAPPANGALPSPSEQVAGVSMASQAIPGMLQNMLTSETSQLGLFPIQVMTQQATRHARRVYVGGLPPLANEQTISTFFSHVMNAIGGNIAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVSVRVRRPTDY...

XP_057794927.1
MASQAIPGMLQNMLTSETSQLGLFPIQVMTQQATRHARRVYVGGLPPLANEQTISTFFSHVMNAIGGNIAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVSVRVRRPTDYNPSLAAPLGPSQPGPYLNLAAAGLTPGMNGESDGADRIFLGGVPYYFSEAQMKELLESFGPLRGFDLVKDRDTGNSKGYGFCFYQDPSVTDVACAALNGLKVGDKTLTVRRATVSGQLKSEQEYVLAQAQQHIAIQKM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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