Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002259`

染色体: Chr02 坐标: 40022937-40025294 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002259`
名称	SmilChr02G002259
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	40022937 - 40025294 / `-`

ID 对照

NCBI Gene ID	`LOC131013384`
GeneID	`131013384`
locus_tag	`-`
NCBI Name	`LOC131013384`
原始查询	`SmilChr02G002259`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=37.5; qcov=0.907; evalue=1.21e-131; confidence=medium
Rice	`Os10g0495200` (Rf4) - identity=30.6; qcov=0.907; evalue=1.52e-91; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131013384

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057797432.1`
2	Chloroplast	叶绿体	0.20000	`XP_057797432.1`
3	Nucleus	细胞核	0.00000	`XP_057797432.1`
4	Chromosome	染色体	0.00000	`XP_057797432.1`
5	Centromere	着丝粒	0.00000	`XP_057797432.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:40023746`	`CA`	`C`	1bp_deletion	frameshift_variant	11	B120,B2,B30,B7,B81,C11,C20,C40,C42,C69,C9
`Chr2:40023762`	`A`	`AT`	1bp_insertion	frameshift_variant	11	B120,B2,B30,B7,B81,C11,C20,C40,C42,C69,C9
`Chr2:40023807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C7,C71
`Chr2:40023815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:40023871`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,D3
`Chr2:40023975`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B68
`Chr2:40024301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B62,B95,C14
`Chr2:40024337`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,C8
`Chr2:40024575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,C30
`Chr2:40024623`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B100,B14,C5,C62,D10
`Chr2:40024792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B118,B41,B61,C51
`Chr2:40024810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B122,C16,C60,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797432.1

612 aa

306

612

PPR_3

TPR_24

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

TPR_24

PPR_2

PPR_1

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

TPR_24

PPR

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PF13812 PPR_3 75-133 aa PF23276 TPR_24 198-296 aa PF01535 PPR 199-224 aa PF13812 PPR_3 216-272 aa PF12854 PPR_1 226-255 aa PF13041 PPR_2 228-276 aa PF01535 PPR 231-260 aa PF12854 PPR_1 258-291 aa PF13041 PPR_2 262-296 aa PF01535 PPR 265-295 aa PF13812 PPR_3 286-341 aa PF23276 TPR_24 294-392 aa PF13041 PPR_2 298-345 aa PF12854 PPR_1 299-325 aa PF01535 PPR 300-329 aa PF12854 PPR_1 329-361 aa PF13041 PPR_2 332-381 aa PF01535 PPR 335-365 aa PF13812 PPR_3 356-388 aa PF12854 PPR_1 363-392 aa PF13041 PPR_2 367-414 aa PF01535 PPR 370-399 aa PF12854 PPR_1 398-431 aa PF13041 PPR_2 403-451 aa PF23276 TPR_24 403-499 aa PF01535 PPR 405-435 aa PF13812 PPR_3 425-482 aa PF12854 PPR_1 434-463 aa PF01535 PPR 441-469 aa PF13041 PPR_2 444-486 aa PF12854 PPR_1 469-499 aa PF13041 PPR_2 472-521 aa PF01535 PPR 475-505 aa PF23276 TPR_24 486-589 aa PF13812 PPR_3 496-551 aa PF12854 PPR_1 503-536 aa PF13041 PPR_2 507-556 aa PF01535 PPR 511-540 aa PF12854 PPR_1 539-570 aa PF13041 PPR_2 543-587 aa PF01535 PPR 545-572 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797432.1`	Pfam	`PF13812`	PPR_3	Repeat	75	133	4.6e-63	209.9	Pentatricopeptide repeat domain
`XP_057797432.1`	Pfam	`PF23276`	TPR_24	Repeat	198	296	2.3e-36	125.4	Pentatricopeptide repeat-containing protein
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	199	224	1.8e-93	301.2	PPR repeat
`XP_057797432.1`	Pfam	`PF13812`	PPR_3	Repeat	216	272	4.6e-63	209.9	Pentatricopeptide repeat domain
`XP_057797432.1`	Pfam	`PF12854`	PPR_1	Repeat	226	255	1.6e-127	415.5	PPR repeat
`XP_057797432.1`	Pfam	`PF13041`	PPR_2	Repeat	228	276	4.3e-156	507.7	PPR repeat family
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	231	260	1.8e-93	301.2	PPR repeat
`XP_057797432.1`	Pfam	`PF12854`	PPR_1	Repeat	258	291	1.6e-127	415.5	PPR repeat
`XP_057797432.1`	Pfam	`PF13041`	PPR_2	Repeat	262	296	4.3e-156	507.7	PPR repeat family
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	265	295	1.8e-93	301.2	PPR repeat
`XP_057797432.1`	Pfam	`PF13812`	PPR_3	Repeat	286	341	4.6e-63	209.9	Pentatricopeptide repeat domain
`XP_057797432.1`	Pfam	`PF23276`	TPR_24	Repeat	294	392	2.3e-36	125.4	Pentatricopeptide repeat-containing protein
`XP_057797432.1`	Pfam	`PF13041`	PPR_2	Repeat	298	345	4.3e-156	507.7	PPR repeat family
`XP_057797432.1`	Pfam	`PF12854`	PPR_1	Repeat	299	325	1.6e-127	415.5	PPR repeat
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	300	329	1.8e-93	301.2	PPR repeat
`XP_057797432.1`	Pfam	`PF12854`	PPR_1	Repeat	329	361	1.6e-127	415.5	PPR repeat
`XP_057797432.1`	Pfam	`PF13041`	PPR_2	Repeat	332	381	4.3e-156	507.7	PPR repeat family
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	335	365	1.8e-93	301.2	PPR repeat
`XP_057797432.1`	Pfam	`PF13812`	PPR_3	Repeat	356	388	4.6e-63	209.9	Pentatricopeptide repeat domain
`XP_057797432.1`	Pfam	`PF12854`	PPR_1	Repeat	363	392	1.6e-127	415.5	PPR repeat
`XP_057797432.1`	Pfam	`PF13041`	PPR_2	Repeat	367	414	4.3e-156	507.7	PPR repeat family
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	370	399	1.8e-93	301.2	PPR repeat
`XP_057797432.1`	Pfam	`PF12854`	PPR_1	Repeat	398	431	1.6e-127	415.5	PPR repeat
`XP_057797432.1`	Pfam	`PF13041`	PPR_2	Repeat	403	451	4.3e-156	507.7	PPR repeat family
`XP_057797432.1`	Pfam	`PF23276`	TPR_24	Repeat	403	499	2.3e-36	125.4	Pentatricopeptide repeat-containing protein
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	405	435	1.8e-93	301.2	PPR repeat
`XP_057797432.1`	Pfam	`PF13812`	PPR_3	Repeat	425	482	4.6e-63	209.9	Pentatricopeptide repeat domain
`XP_057797432.1`	Pfam	`PF12854`	PPR_1	Repeat	434	463	1.6e-127	415.5	PPR repeat
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	441	469	1.8e-93	301.2	PPR repeat
`XP_057797432.1`	Pfam	`PF13041`	PPR_2	Repeat	444	486	4.3e-156	507.7	PPR repeat family
`XP_057797432.1`	Pfam	`PF12854`	PPR_1	Repeat	469	499	1.6e-127	415.5	PPR repeat
`XP_057797432.1`	Pfam	`PF13041`	PPR_2	Repeat	472	521	4.3e-156	507.7	PPR repeat family
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	475	505	1.8e-93	301.2	PPR repeat
`XP_057797432.1`	Pfam	`PF23276`	TPR_24	Repeat	486	589	2.3e-36	125.4	Pentatricopeptide repeat-containing protein
`XP_057797432.1`	Pfam	`PF13812`	PPR_3	Repeat	496	551	4.6e-63	209.9	Pentatricopeptide repeat domain
`XP_057797432.1`	Pfam	`PF12854`	PPR_1	Repeat	503	536	1.6e-127	415.5	PPR repeat
`XP_057797432.1`	Pfam	`PF13041`	PPR_2	Repeat	507	556	4.3e-156	507.7	PPR repeat family
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	511	540	1.8e-93	301.2	PPR repeat
`XP_057797432.1`	Pfam	`PF12854`	PPR_1	Repeat	539	570	1.6e-127	415.5	PPR repeat
`XP_057797432.1`	Pfam	`PF13041`	PPR_2	Repeat	543	587	4.3e-156	507.7	PPR repeat family
`XP_057797432.1`	Pfam	`PF01535`	PPR	Repeat	545	572	1.8e-93	301.2	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941449.1
GACGCTTTTAGGTTCACGGAGAAACCAGAAATCTTGCACAATTTCCCCCTTTTGATCAAATTATCGCAGCCGATGAAGATGAAGCTGAGCAGAAATACAGCTGCTTCGGCAATTGATCGTTTTCGTAGAAGACGAATTGCGGCTAAATCTTCGCCTGAGTTTGGTAATTTTGTTCCAATGTTTTCTTATTTCTGTTCGAATTTCCACAATTTCAGTTGCAAAGATAAACCTTTTCCACCTAAGCTGCGTAGAATAGATTT...

CDS

1 records

下载 CDS FASTA

LOC131013384
ATGAAGATGAAGCTGAGCAGAAATACAGCTGCTTCGGCAATTGATCGTTTTCGTAGAAGACGAATTGCGGCTAAATCTTCGCCTGAGTTTGGTAATTTTGTTCCAATGTTTTCTTATTTCTGTTCGAATTTCCACAATTTCAGTTGCAAAGATAAACCTTTTCCACCTAAGCTGCGTAGAATAGATTTGAGCTGTGTTCATGAATTGAATGATGCTGTCAACTTGTTTCACGAAATGGTGAGAATGCGTCCGCAGCCTTG...

Protein

1 records

下载 Protein FASTA

XP_057797432.1
MKMKLSRNTAASAIDRFRRRRIAAKSSPEFGNFVPMFSYFCSNFHNFSCKDKPFPPKLRRIDLSCVHELNDAVNLFHEMVRMRPQPCISAYNKLISVTAKMKQYCFALYVFDEMRRMGAPVNDCTMNIAINCYCCLKRVGFGFAIMSTFFKSGYEPDAITFATLIKGLFLDEKAADAMNLFKKVLDLRVCEPSNVMILTVIDGLCKAGQIFAAHELLRRLERSGRRLDVWAYSALIDGLRKCGMVDDAFRLLSKMINKGI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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