当前解析结果
SmilChr02G002260| 统一新 Gene ID | SmilChr02G002260 |
|---|---|
| 名称 | SmilChr02G002260 |
| 描述 | uncharacterized SmilChr02G002260 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 40040158 - 40046431 / + |
| NCBI Gene ID | LOC131008444 |
|---|---|
| GeneID | 131008444 |
| locus_tag | - |
| NCBI Name | LOC131008444 |
| 原始查询 | SmilChr02G002260 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os11g0206700; species=rice; confidence=low |
| 产物 | hit=Os11g0206700; species=rice; confidence=low |
| Arabidopsis | AT1G31930 (XLG3)extra-large GTP-binding protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:840083] identity=66.7; qcov=0.393; evalue=9.46e-15; confidence=low |
| Rice | Os11g0206700- identity=70.8; qcov=0.393; evalue=2.36e-16; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008444 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791306.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057791306.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057791306.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791306.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791306.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:40040456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,A7,B115,B48,B76 |
Chr2:40040471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr2:40040487 |
C |
T |
EMS_canonical_SNV | stop_gained | 23 | B1,B101,B123,B131,B14,B2,B36,B74,B82,B85,B89,B91,C14,C22,C28,C35,C46,C48,C57,C63,C65,C74,C77 |
Chr2:40040504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B101,C43,C87 |
Chr2:40040533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B87,C46,C50 |
Chr2:40040577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr2:40040598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,A9,D1 |
Chr2:40040618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B95 |
Chr2:40040619 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | A10,D1 |
Chr2:40040619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,D1 |
Chr2:40040767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr2:40040778 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | C59 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。