当前解析结果
SmilChr02G002292| 统一新 Gene ID | SmilChr02G002292 |
|---|---|
| 名称 | SmilChr02G002292 |
| 描述 | uncharacterized SmilChr02G002292 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 40457252 - 40460983 / + |
| NCBI Gene ID | LOC131013414 |
|---|---|
| GeneID | 131013414 |
| locus_tag | - |
| NCBI Name | LOC131013414 |
| 原始查询 | SmilChr02G002292 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | OsSTA137; symbol=OsSTA137; hit=Os04g0680300; species=rice; confidence=high |
| 产物 | OsSTA137; symbol=OsSTA137; hit=Os04g0680300; species=rice; confidence=high |
| Arabidopsis | AT4G21720 (AT4G21720)defensin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:828260] identity=68.6; qcov=0.63; evalue=1.15e-52; confidence=high |
| Rice | Os04g0680300 (OsSTA137)- identity=62.9; qcov=0.864; evalue=4.26e-57; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013414 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057797471.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057797471.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057797471.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057797471.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057797471.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:40458504 |
AT |
A |
1bp_deletion | frameshift_variant | 9 | B123,B3,B36,B51,B58,B72,C24,C64,C66 |
Chr2:40458567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,D3 |
Chr2:40458623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C1,C31,C49 |
Chr2:40458625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C1,C31,C49 |
Chr2:40459938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C1,C17,C31,C4,C49 |
Chr2:40459975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C1,C17,C31,C4,C49 |
Chr2:40460208 |
TG |
T |
1bp_deletion | frameshift_variant | 4 | C17,C31,C4,C49 |
Chr2:40460208 |
TG |
T |
1bp_deletion | CDS_variant | 4 | C17,C31,C4,C49 |
Chr2:40460212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C17,C31,C4,C49 |
Chr2:40460362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C1,C4,C49 |
Chr2:40460553 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,C5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。