当前解析结果
SmilChr02G002294| 统一新 Gene ID | SmilChr02G002294 |
|---|---|
| 名称 | SmilChr02G002294 |
| 描述 | uncharacterized SmilChr02G002294 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 40464633 - 40465469 / + |
| NCBI Gene ID | LOC131008451 |
|---|---|
| GeneID | 131008451 |
| locus_tag | - |
| NCBI Name | LOC131008451 |
| 原始查询 | SmilChr02G002294 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0205337; species=rice; confidence=low |
| 产物 | hit=Os06g0205337; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=29.6; qcov=0.874; evalue=1.35e-19; confidence=low |
| Rice | Os06g0205337- identity=30.2; qcov=0.881; evalue=1.24e-21; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008451 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057791311.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057791311.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057791311.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057791311.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057791311.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:40464637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:40464644 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B131 |
Chr2:40464644 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B131 |
Chr2:40464645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B98,C1,C4,C65,C8 |
Chr2:40464680 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A16,C30 |
Chr2:40464698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:40464736 |
A |
AGT |
2bp_insertion | frameshift_variant | 1 | B40 |
Chr2:40464736 |
A |
AGT |
2bp_insertion | CDS_variant | 1 | B40 |
Chr2:40464737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr2:40464739 |
G |
A |
EMS_canonical_SNV | stop_gained | 28 | A18,A5,A7,A8,B10,B114,B128,B13,B24,B27,B38,B40,B44,B62,B69,B70,B8,B85,C11,C15,C31,C36,C52,C67,C69,C73,C80,C83 |
Chr2:40464740 |
G |
A |
EMS_canonical_SNV | stop_gained | 16 | A10,A25,B107,B109,B118,B128,B130,B136,B61,B81,B84,C15,C29,C47,C77,D4 |
Chr2:40464751 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B1,B100,C5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。