当前解析结果
SmilChr02G002299| 统一新 Gene ID | SmilChr02G002299 |
|---|---|
| 名称 | SmilChr02G002299 |
| 描述 | glycerate dehydrogenase HPR, peroxisomal |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 40580833 - 40588306 / + |
| NCBI Gene ID | LOC131013402 |
|---|---|
| GeneID | 131013402 |
| locus_tag | - |
| NCBI Name | LOC131013402 |
| 原始查询 | SmilChr02G002299 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycerate dehydrogenase HPR, peroxisomal |
| 产物 | glycerate dehydrogenase HPR%2C peroxisomal |
| Arabidopsis | AT1G68010 (HPR)hydroxypyruvate reductase [Source:NCBI gene (formerly Entrezgene);Acc:843129] identity=89.9; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0101500 (OsHPR1)- identity=85.2; qcov=1; evalue=0; confidence=high |
| GO | GO:0005829 (cytosol); GO:0008465 (hydroxypyruvate reductase (NADH) activity); GO:0016618 (hydroxypyruvate reductase [NAD(P)H] activity); GO:0030267 (glyoxylate reductase (NADPH) activity); GO:0051287 (NAD binding) |
| KEGG | smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00389 (2-Hacid_dh); PF02826 (2-Hacid_dh_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013402 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057797460.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.60000 | XP_057797460.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057797460.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797460.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797460.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:40586430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,B54,C81 |
Chr2:40586450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:40586456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C37 |
Chr2:40586504 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,C45 |
Chr2:40586509 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr2:40586682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr2:40586823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr2:40586858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B93,C2 |
Chr2:40586885 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B128 |
Chr2:40586893 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,D1 |
Chr2:40587009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr2:40587049 |
C |
T |
EMS_canonical_SNV | stop_gained | 4 | B124,B2,C78,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797460.1PF00389
2-Hacid_dh 38-346 aa
PF02826
2-Hacid_dh_C 130-322 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797460.1 |
Pfam | PF00389 |
2-Hacid_dh | Domain | 38 | 346 | 1.5e-16 | 61.0 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
XP_057797460.1 |
Pfam | PF02826 |
2-Hacid_dh_C | Domain | 130 | 322 | 3.2e-47 | 160.9 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。