Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002302`

染色体: Chr02 坐标: 40607092-40611783 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002302`
名称	SmilChr02G002302
描述	uncharacterized SmilChr02G002302
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	40607092 - 40611783 / `-`

ID 对照

NCBI Gene ID	`LOC131008454`
GeneID	`131008454`
locus_tag	`-`
NCBI Name	`LOC131008454`
原始查询	`SmilChr02G002302`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0142900; species=rice; confidence=weak
产物	hit=Os12g0142900; species=rice; confidence=weak
Arabidopsis	`AT3G01410` (AT3G01410) Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=37.3; qcov=0.089; evalue=7.72e-17; confidence=weak
Rice	`Os12g0142900` - identity=31.2; qcov=0.263; evalue=1.15e-63; confidence=weak
GO	GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration)
KEGG	-
Pfam	PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803)
InterPro	-
eggNOG	-
NR	GeneID:131008454

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057791313.1`
2	Cytosol	细胞质基质	0.80000	`XP_057791313.1`
3	Nucleus	细胞核	0.00000	`XP_057791313.1`
4	Chromosome	染色体	0.00000	`XP_057791313.1`
5	Centromere	着丝粒	0.00000	`XP_057791313.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:40607475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr2:40607506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr2:40607512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr2:40607523`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A25,B43,C63
`Chr2:40607528`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr2:40607529`	`TAG`	`T`	2bp_deletion	frameshift_variant	2	B113,C57
`Chr2:40607529`	`TAG`	`T`	2bp_deletion	CDS_variant	2	B113,C57
`Chr2:40607531`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B56,C14,C8,D3
`Chr2:40607532`	`G`	`GAA`	2bp_insertion	frameshift_variant	2	B113,C57
`Chr2:40607532`	`G`	`GAA`	2bp_insertion	CDS_variant	2	B113,C57
`Chr2:40607587`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C56,C65
`Chr2:40607592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B43,C40,C57,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057791313.1

1510 aa

755

1510

RVT_1

RT_RNaseH_2

RT_RNaseH

RNase_H

RVT_3

Integrase_H2C2

rve

DUF8803

PF00078 RVT_1 527-687 aa PF17919 RT_RNaseH_2 750-847 aa PF17917 RT_RNaseH 776-879 aa PF00075 RNase_H 929-1049 aa PF13456 RVT_3 931-1050 aa PF17921 Integrase_H2C2 1150-1203 aa PF00665 rve 1223-1318 aa PF31073 DUF8803 1445-1509 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057791313.1`	Pfam	`PF00078`	RVT_1	Domain	527	687	8.8e-35	121.1	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057791313.1`	Pfam	`PF17919`	RT_RNaseH_2	Domain	750	847	2.4e-23	82.8	RNase H-like domain found in reverse transcriptase
`XP_057791313.1`	Pfam	`PF17917`	RT_RNaseH	Domain	776	879	1.1e-23	84.1	RNase H-like domain found in reverse transcriptase
`XP_057791313.1`	Pfam	`PF00075`	RNase_H	Domain	929	1049	4e-08	34.3	RNase H
`XP_057791313.1`	Pfam	`PF13456`	RVT_3	Domain	931	1050	1.9e-20	73.7	Reverse transcriptase-like
`XP_057791313.1`	Pfam	`PF17921`	Integrase_H2C2	Domain	1150	1203	1.7e-09	38.3	Integrase zinc binding domain
`XP_057791313.1`	Pfam	`PF00665`	rve	Domain	1223	1318	2.8e-11	44.3	Integrase core domain
`XP_057791313.1`	Pfam	`PF31073`	DUF8803	Domain	1445	1509	2.1e-12	47.4	Domain of unknown function (DUF8803)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057935330.1
ATGGAAGAAGACGATGATGCATTGGAGCAAAAGGTCAATCGAATTCTCTTCGATGGAGGCTCGGCAGTCAATATCTTGCCACTAAGGACTTTGAAGCAATTGGGAATCCAAGCAGAAGAGCTGTCAAACAGTCGATTGATGATTCAAGGTTTCAACCATGAAGGGCAAAGAGCTCTTGGAACTATAAGGCTGCGATTGCAGATGCAGGACATGGAGTCCACAGCGTTGCTTCATGTGATTGATGCAAGGACATCCTACAA...

CDS

1 records

下载 CDS FASTA

LOC131008454
ATGGAAGAAGACGATGATGCATTGGAGCAAAAGGTCAATCGAATTCTCTTCGATGGAGGCTCGGCAGTCAATATCTTGCCACTAAGGACTTTGAAGCAATTGGGAATCCAAGCAGAAGAGCTGTCAAACAGTCGATTGATGATTCAAGGTTTCAACCATGAAGGGCAAAGAGCTCTTGGAACTATAAGGCTGCGATTGCAGATGCAGGACATGGAGTCCACAGCGTTGCTTCATGTGATTGATGCAAGGACATCCTACAA...

Protein

1 records

下载 Protein FASTA

XP_057791313.1
MEEDDDALEQKVNRILFDGGSAVNILPLRTLKQLGIQAEELSNSRLMIQGFNHEGQRALGTIRLRLQMQDMESTALLHVIDARTSYNMLLGRPWLHENGVIPSTLHQYFKYYQNGTVRKVVGDHKPFTEAESHFADAQFYLGRTKATMVERDVPQEESGSRQEKESRPKMEGFTIPLTKIDAKKPIPQSLKDFAYKLLVNAGYNPQESFTSKSHVRKTANTSQNPKAGLGYMVQSPIRIAIKRATANYDSTKQIPKSSSN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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