Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002304`

染色体: Chr02 坐标: 40647737-40653607 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002304`
名称	SmilChr02G002304
描述	E3 ubiquitin-protein ligase JMJ24
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	40647737 - 40653607 / `-`

ID 对照

NCBI Gene ID	`LOC131013426`
GeneID	`131013426`
locus_tag	`-`
NCBI Name	`LOC131013426`
原始查询	`SmilChr02G002304`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase JMJ24
产物	E3 ubiquitin-protein ligase JMJ24
Arabidopsis	`AT1G09060` (AT1G09060) JmjC domain protein JMJ24 [Source:NCBI gene (formerly Entrezgene);Acc:837427] identity=51.9; qcov=0.998; evalue=0; confidence=high
Rice	`Os03g0346700` (JMJ716) - identity=45.8; qcov=0.834; evalue=0; confidence=high
GO	GO:0000118 (histone deacetylase complex); GO:0000785 (chromatin); GO:0003712 (transcription coregulator activity); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0031490 (chromatin DNA binding); GO:0032454 (histone H3K9 demethylase activity); GO:0033169 (GO:0033169)
KEGG	-
Pfam	PF08879 (WRC); PF10497 (zf-4CXXC_R1)
InterPro	-
eggNOG	-
NR	GeneID:131013426

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797474.1`
2	Chromosome	染色体	0.00000	`XP_057797474.1`
3	Centromere	着丝粒	0.00000	`XP_057797474.1`
4	Chromatin	染色质	0.00000	`XP_057797474.1`
5	Telomere	端粒	0.00000	`XP_057797474.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:40648990`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:40649002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B117,B72
`Chr2:40649343`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr2:40649394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:40649437`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B130
`Chr2:40649437`	`AT`	`A`	1bp_deletion	CDS_variant	1	B130
`Chr2:40649442`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B130
`Chr2:40649442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr2:40649485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,B72
`Chr2:40650003`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B102
`Chr2:40650003`	`TC`	`T`	1bp_deletion	CDS_variant	1	B102
`Chr2:40650358`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B137,B76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797474.1

945 aa

472

945

WRC

zf-4CXXC_R1

PF08879 WRC 18-58 aa PF10497 zf-4CXXC_R1 188-259 aa

XP_057797475.1

945 aa

472

945

WRC

zf-4CXXC_R1

PF08879 WRC 18-58 aa PF10497 zf-4CXXC_R1 188-259 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797474.1`	Pfam	`PF08879`	WRC	Domain	18	58	1.1e-14	54.5	WRC
`XP_057797474.1`	Pfam	`PF10497`	zf-4CXXC_R1	Domain	188	259	1.3e-07	32.4	Zinc-finger domain of monoamine-oxidase A repressor R1
`XP_057797475.1`	Pfam	`PF08879`	WRC	Domain	18	58	1.1e-14	54.5	WRC
`XP_057797475.1`	Pfam	`PF10497`	zf-4CXXC_R1	Domain	188	259	1.3e-07	32.4	Zinc-finger domain of monoamine-oxidase A repressor R1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009097676.1
AAAGAAATATGACGTCGTTTTAGCTCTCCTTCTTGCCCAATTCCTACTGTGCATACCGGCTCTCTGCTAAATTTCTCTTCTCCAATTTCACCATGCTGATATTGAAATTGCTGGAACTACGGTGAGAGAGATAGAGAAGAGTGAGAGAGGAAGAGAGAGATTATCTATCCTCAGCCTGAAATATTCTCACTGATCAGAATAGTTGTTAATGGATCATCCACGTTCCATCTCTGCGGGAGGTGAGGACAATGTTGCAATTC...

XR_009097675.1
AAAGAAATATGACGTCGTTTTAGCTCTCCTTCTTGCCCAATTCCTACTGTGCATACCGGCTCTCTGCTAAATTTCTCTTCTCCAATTTCACCATGCTGATATTGAAATTGCTGGAACTACGGTGAGAGAGATAGAGAAGAGTGAGAGAGGAAGAGAGAGATTATCTATCCTCAGCCTGAAATATTCTCACTGATCAGAATAGTTGTTAATGGATCATCCACGTTCCATCTCTGCGGGAGGTGAGGACAATGTTGCAATTC...

CDS

2 records

下载 CDS FASTA

LOC131013426
ATGGATCATCCACGTTCCATCTCTGCGGGAGGTGAGGACAATGTTGCAATTCCTGATGATTTGCGTTGTAAGAGATCCGATGGGAAACAGTGGAGATGCACTGCCATGTCCATGCCCGACAAGACGGTATGCGAAAAGCATTACATCCAGGCAAAGAAGAGGGCAGCTAATTCTGCAATGCGTGCAAGTATAAAGAAAGCTAAGAGGAAATCCGTAGGTGAAAGTGATATCTATTTGGAAAGCAAGAGTGATGATATGGA...

Protein

2 records

下载 Protein FASTA

XP_057797474.1
MDHPRSISAGGEDNVAIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRASIKKAKRKSVGESDIYLESKSDDMDLPLSSQFGDYSGSSGKKKKEKSSKAQASYSPEMPAGRSLSGRSSLRSTDDLDRDGSDYEDSRRSYRTPPTSVVDSERSKSQKMFEISPMTETSDGSSESSDDTEGQPCHQCRSTNKDKVVWCLKCDRRGYCENCILTWYSDISVQEIQRVCPACRGTCSCRVCMRGDNLIKAR...

XP_057797475.1
MDHPRSISAGGEDNVAIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRASIKKAKRKSVGESDIYLESKSDDMDLPLSSQFGDYSGSSGKKKKEKSSKAQASYSPEMPAGRSLSGRSSLRSTDDLDRDGSDYEDSRRSYRTPPTSVVDSERSKSQKMFEISPMTETSDGSSESSDDTEGQPCHQCRSTNKDKVVWCLKCDRRGYCENCILTWYSDISVQEIQRVCPACRGTCSCRVCMRGDNLIKAR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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