Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002310`

染色体: Chr02 坐标: 40713249-40717348 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002310`
名称	SmilChr02G002310
描述	glycerate dehydrogenase HPR, peroxisomal-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	40713249 - 40717348 / `+`

ID 对照

NCBI Gene ID	`LOC131013433`
GeneID	`131013433`
locus_tag	`-`
NCBI Name	`LOC131013433`
原始查询	`SmilChr02G002310`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycerate dehydrogenase HPR, peroxisomal-like
产物	glycerate dehydrogenase HPR%2C peroxisomal-like
Arabidopsis	`AT1G68010` (HPR) hydroxypyruvate reductase [Source:NCBI gene (formerly Entrezgene);Acc:843129] identity=89.6; qcov=1; evalue=0; confidence=high
Rice	`Os02g0101500` (OsHPR1) - identity=84.5; qcov=1; evalue=0; confidence=high
GO	GO:0005829 (cytosol); GO:0008465 (hydroxypyruvate reductase (NADH) activity); GO:0016618 (hydroxypyruvate reductase [NAD(P)H] activity); GO:0030267 (glyoxylate reductase (NADPH) activity); GO:0051287 (NAD binding)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00389 (2-Hacid_dh); PF02826 (2-Hacid_dh_C)
InterPro	-
eggNOG	-
NR	GeneID:131013433

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057797483.1`
2	Peroxisome	过氧化物酶体	0.60000	`XP_057797483.1`
3	Cytoplasm	细胞质	0.40000	`XP_057797483.1`
4	Nucleus	细胞核	0.00000	`XP_057797483.1`
5	Chromosome	染色体	0.00000	`XP_057797483.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:40714110`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B27,B64,B87,C38,C9
`Chr2:40714264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:40714270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:40714286`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr2:40714323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B123,B36
`Chr2:40714410`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr2:40714432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:40714454`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr2:40714507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,B53,B71
`Chr2:40714656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B120,B34,C11,C4,C42
`Chr2:40714733`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B123,B36,B51
`Chr2:40714733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B36,B51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797483.1

386 aa

193

386

2-Hacid_dh

2-Hacid_dh_C

PF00389 2-Hacid_dh 38-346 aa PF02826 2-Hacid_dh_C 130-322 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797483.1`	Pfam	`PF00389`	2-Hacid_dh	Domain	38	346	1.8e-15	57.5	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
`XP_057797483.1`	Pfam	`PF02826`	2-Hacid_dh_C	Domain	130	322	1.1e-46	159.1	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941500.1
GTTTATTTTTAATTTGAAGACTAATTTCGGCGCTTTGTACGTGGGTTCTTCCTCTTCCTTCCTCTTCTCCCTCTGTCAACTCCGCTCTCTCTCTCTCTCTAGCACGCACGCGTTTCTGCATACGTATACATACACTTGTTTTTGTATCTATTACTTTTTTCTCTCCGAATCTATCCATTGCGATTACGTCAGATGTTTGAAGTGCAAACGTTAAGAACGAAGCGGTGAAGCCTATATCAGAGGTGATTTCAGCTGCAAGT...

CDS

1 records

下载 CDS FASTA

LOC131013433
ATGGCTAGACCATTGCAAGTTGAAGTGTACAATCCTAATGGAAAATACAGAGTTGTTAGCACCAAATCTATGCCAGGAACACGCTGGATTAATCTCTTGGTTGATCAAGATTGCCGTCTAGAAATATGCACGGAGAAGAAAACCATACTATCTGTTGAAGACATCATTTCTTTGATTGGGAATAAGTGTGATGGAGTTATTGGACAGCTGACAGAGGATTGGGGGGAGAGATTGTTCAGTGCATTGAGCAGAGCAGGAGG...

Protein

1 records

下载 Protein FASTA

XP_057797483.1
MARPLQVEVYNPNGKYRVVSTKSMPGTRWINLLVDQDCRLEICTEKKTILSVEDIISLIGNKCDGVIGQLTEDWGERLFSALSRAGGSAFSNMAVGYNNVDVDAANKYSVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRGGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLVNKERLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器