当前解析结果
SmilChr02G002315| 统一新 Gene ID | SmilChr02G002315 |
|---|---|
| 名称 | SmilChr02G002315 |
| 描述 | L-type lectin-domain containing receptor kinase VII.1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 40774146 - 40776510 / + |
| NCBI Gene ID | LOC131013438 |
|---|---|
| GeneID | 131013438 |
| locus_tag | - |
| NCBI Name | LOC131013438 |
| 原始查询 | SmilChr02G002315 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | L-type lectin-domain containing receptor kinase VII.1-like |
| 产物 | L-type lectin-domain containing receptor kinase VII.1-like |
| Arabidopsis | AT4G04960 (AT4G04960)Concanavalin A-like lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825837] identity=61.6; qcov=0.96; evalue=0; confidence=high |
| Rice | Os07g0131500 (OJ1606_D04.110)- identity=44.8; qcov=0.893; evalue=4.72e-170; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00139 (Lectin_legB); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013438 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797500.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797500.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797500.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797500.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797500.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:40774461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C32,C68,C82,D5 |
Chr2:40774511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr2:40774512 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B132 |
Chr2:40774512 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B132 |
Chr2:40774649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr2:40774672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B123,B36,B51,B53 |
Chr2:40774751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C17 |
Chr2:40774768 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:40774925 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B24,B72 |
Chr2:40775112 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr2:40775399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C30 |
Chr2:40775749 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,B36,B51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797500.1PF00139
Lectin_legB 22-260 aa
PF00069
Pkinase 349-613 aa
PF07714
PK_Tyr_Ser-Thr 352-613 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797500.1 |
Pfam | PF00139 |
Lectin_legB | Domain | 22 | 260 | 2.2e-63 | 214.8 | Legume lectin domain |
XP_057797500.1 |
Pfam | PF00069 |
Pkinase | Domain | 349 | 613 | 1.5e-44 | 153.1 | Protein kinase domain |
XP_057797500.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 352 | 613 | 9.5e-44 | 150.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。