当前解析结果
SmilChr02G002355| 统一新 Gene ID | SmilChr02G002355 |
|---|---|
| 名称 | SmilChr02G002355 |
| 描述 | uncharacterized SmilChr02G002355 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 41340616 - 41341587 / + |
| NCBI Gene ID | LOC131008472 |
|---|---|
| GeneID | 131008472 |
| locus_tag | - |
| NCBI Name | LOC131008472 |
| 原始查询 | SmilChr02G002355 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0523701; species=rice; confidence=weak |
| 产物 | hit=Os06g0523701; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os06g0523701- identity=43.8; qcov=0.249; evalue=3.52e-17; confidence=weak |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131008472 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057791330.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057791330.1 |
| 3 | Chromosome | 染色体 | 0.20000 | XP_057791330.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057791330.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057791330.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:41340647 |
G |
A |
EMS_canonical_SNV | stop_gained | 16 | B128,B27,B38,B39,B44,B62,B85,C11,C25,C31,C52,C67,C69,C73,C80,C83 |
Chr2:41340654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C16,C50,C62 |
Chr2:41340673 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | B104 |
Chr2:41340673 |
A |
AG |
1bp_insertion | CDS_variant | 1 | B104 |
Chr2:41340691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:41340758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,B78 |
Chr2:41340850 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:41340864 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:41340930 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | C25,C54,C56,C69,D6 |
Chr2:41341103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B5,B6,C6 |
Chr2:41341121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A5,B5,B6,B85,C6 |
Chr2:41341273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。