Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002357`

染色体: Chr02 坐标: 41361923-41365429 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002357`
名称	SmilChr02G002357
描述	transcription factor VOZ1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	41361923 - 41365429 / `+`

ID 对照

NCBI Gene ID	`LOC131013470`
GeneID	`131013470`
locus_tag	`-`
NCBI Name	`LOC131013470`
原始查询	`SmilChr02G002357`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor VOZ1-like
产物	transcription factor VOZ1-like
Arabidopsis	`AT1G28520` (VOZ1) vascular plant one zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:839752] identity=62.7; qcov=1.04; evalue=0; confidence=high
Rice	`Os01g0753000` (EIP8) - identity=49.6; qcov=1.06; evalue=1.82e-130; confidence=high
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0048578 (positive regulation of long-day photoperiodism, flowering)
KEGG	-
Pfam	PF28235 (VOZ_N); PF29201 (VOZ_C)
InterPro	-
eggNOG	-
NR	GeneID:131013470

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057797542.1`
2	Chromosome	染色体	0.00000	`XP_057797542.1`
3	Centromere	着丝粒	0.00000	`XP_057797542.1`
4	Chromatin	染色质	0.00000	`XP_057797542.1`
5	Telomere	端粒	0.00000	`XP_057797542.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:41362382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C17,C59
`Chr2:41362423`	`C`	`CG`	1bp_insertion	frameshift_variant	101	A1,A10,A14,A2,A21,A25,A3,A5,A9,B1,B100,B103,B107,B108,B109,B115,B118,B119,B12,B121,B125,B126,B127,B132,B133,B136,B137,B139,B20,B24,B33,B35,B37,B40,B44,B45,B46,B50,B52,B54,B55,B56,B57,B58,B62,B63,B67,B7,B70,B71,B72,B77,B80,B83,B86,B87,B89,B9,B93,B94,B95,B96,B98,C13,C18,C19,C2,C22,C23,C24,C25,C26,C28,C29,C31,C33,C34,C42,C45,C49,C53,C55,C58,C6,C60,C61,C62,C63,C7,C70,C73,C75,C83,C85,D10,D2,D3,D5,D7,D8,D9
`Chr2:41362438`	`C`	`CTG`	2bp_insertion	frameshift_variant	3	A25,B136,C83
`Chr2:41362438`	`C`	`CTG`	2bp_insertion	CDS_variant	3	A25,B136,C83
`Chr2:41362441`	`C`	`CG`	1bp_insertion	frameshift_variant	107	A1,A10,A11,A14,A16,A2,A21,A3,A4,A5,A9,B1,B100,B103,B106,B107,B108,B109,B115,B118,B119,B12,B121,B125,B126,B127,B132,B133,B136,B137,B139,B20,B24,B33,B34,B35,B37,B40,B44,B45,B46,B50,B52,B54,B55,B56,B57,B58,B62,B63,B66,B67,B69,B7,B70,B71,B72,B77,B8,B80,B83,B86,B87,B89,B9,B93,B94,B95,B96,B98,C13,C18,C19,C2,C22,C23,C24,C25,C26,C28,C29,C31,C33,C34,C42,C45,C49,C53,C55,C58,C6,C60,C61,C62,C63,C7,C70,C73,C75,C85,D10,D2,D3,D5,D7,D8,D9
`Chr2:41362539`	`A`	`ATC`	2bp_insertion	frameshift_variant	69	A1,A10,A11,A14,A3,B1,B100,B103,B107,B108,B109,B118,B121,B139,B20,B24,B33,B37,B40,B44,B45,B50,B52,B54,B56,B57,B63,B66,B7,B70,B71,B72,B77,B80,B83,B86,B87,B89,B9,B95,B96,B98,C18,C19,C2,C25,C26,C29,C33,C34,C42,C45,C53,C55,C58,C60,C61,C62,C63,C65,C70,C73,C75,D10,D2,D5,D7,D8,D9
`Chr2:41364199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:41364327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,B66
`Chr2:41364341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:41364352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,C3
`Chr2:41364829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,C37
`Chr2:41364843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797542.1

506 aa

253

506

VOZ_N

VOZ_C

PF28235 VOZ_N 59-95 aa PF29201 VOZ_C 232-423 aa

XP_057797543.1

472 aa

236

472

VOZ_N

VOZ_C

PF28235 VOZ_N 25-61 aa PF29201 VOZ_C 198-389 aa

XP_057797544.1

472 aa

236

472

VOZ_N

VOZ_C

PF28235 VOZ_N 25-61 aa PF29201 VOZ_C 198-389 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797542.1`	Pfam	`PF28235`	VOZ_N	Domain	59	95	1.9e-24	85.6	VOZ N-terminal domain
`XP_057797542.1`	Pfam	`PF29201`	VOZ_C	Domain	232	423	1.3e-105	351.8	VOZ C-terminal domain
`XP_057797543.1`	Pfam	`PF28235`	VOZ_N	Domain	25	61	1.8e-24	85.8	VOZ N-terminal domain
`XP_057797543.1`	Pfam	`PF29201`	VOZ_C	Domain	198	389	1.1e-105	352.1	VOZ C-terminal domain
`XP_057797544.1`	Pfam	`PF28235`	VOZ_N	Domain	25	61	1.8e-24	85.8	VOZ N-terminal domain
`XP_057797544.1`	Pfam	`PF29201`	VOZ_C	Domain	198	389	1.1e-105	352.1	VOZ C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057941560.1
TCCTGTTGTCGTTGAAATAAAAATTGTGTGATTTGTCGGAGTGTGTGTGTGTGTTTGTGATGGGTTTTTTTTGTTCCCCTTCACTTCCAATTAATTGGAGATTGTAGTAATGTTCATGATCATATTCGCGCGATCTCGACGCTAAAGAATTTAGTCTTGCAATTGATTTGATGGTAAAGGGTGTGAAGAGCGTTGCGTGCAAGTCAGCATCGCACCAGGTGTTCAAGGACAGAGCGAAGAATCGCGTTGATGATCTGCAG...

XM_057941559.1
CTGTTGTCGTTGAAATAAAAATTGTGTGATTTGTCGGAGTGTGTGTGTGTGTTTGTGATGGGTTTTTTTTGTTCCCCTTCACTTCCAATTAATTGGAGATTGTAGTAATGTTCATGATCATATTCGCGCGATCTCGACGGTTTTCCCTCTGTTCTTTTGTAAAATTCTATCGCGTTTATGCTAAAGAATTTAGTCTTGCAATTGATTTGATGGTAAAGGGTGTGAAGAGCGTTGCGTGCAAGTCAGCATCGCACCAGGTG...

CDS

3 records

下载 CDS FASTA

LOC131013470
ATGTTCATGATCATATTCGCGCGATCTCGACGGTTTTCCCTCTGTTCTTTTGTAAAATTCTATCGCGTTTATGCTAAAGAATTTAGTCTTGCAATTGATTTGATGGTAAAGGGTGTGAAGAGCGTTGCGTGCAAGTCAGCATCGCACCAGGTGTTCAAGGACAGAGCGAAGAATCGCGTTGATGATCTGCAGGGAATATTCAGCGACCTTCAATCCGCCAGGAAAGAGAGCCGCACCATTGATGTGGCTGTGCTCGAGGA...

LOC131013470
ATGGTAAAGGGTGTGAAGAGCGTTGCGTGCAAGTCAGCATCGCACCAGGTGTTCAAGGACAGAGCGAAGAATCGCGTTGATGATCTGCAGGGAATATTCAGCGACCTTCAATCCGCCAGGAAAGAGAGCCGCACCATTGATGTGGCTGTGCTCGAGGAGCAAGTTCATCAAATGCTCCGAGAGTGGAAGGCCGAGCTCAATGACCCCTCTCCAGCTTCTTCATTGCACCAGGTAGGGAGCCTTGGCTTCTCGTCCGATAT...

Protein

3 records

下载 Protein FASTA

XP_057797542.1
MFMIIFARSRRFSLCSFVKFYRVYAKEFSLAIDLMVKGVKSVACKSASHQVFKDRAKNRVDDLQGIFSDLQSARKESRTIDVAVLEEQVHQMLREWKAELNDPSPASSLHQVGSLGFSSDISRLLQLCEEEDDATSALAAPKPEPDAQKAVHGFTCQQVFPLVDHCKGTGMGAGNMGMNNNMALARQLELQSVAVHHELEQQDFTGFSTTSFLGVDRLPQLPGYQQTIHPPPSAFLGAKCALWDCPRPALGLGWSQEPDE...

XP_057797543.1
MVKGVKSVACKSASHQVFKDRAKNRVDDLQGIFSDLQSARKESRTIDVAVLEEQVHQMLREWKAELNDPSPASSLHQVGSLGFSSDISRLLQLCEEEDDATSALAAPKPEPDAQKAVHGFTCQQVFPLVDHCKGTGMGAGNMGMNNNMALARQLELQSVAVHHELEQQDFTGFSTTSFLGVDRLPQLPGYQQTIHPPPSAFLGAKCALWDCPRPALGLGWSQEPDEYCSVYHAGLAPGEGYPGRAPVVRPGGIGLKDNLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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