Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002364`

染色体: Chr02 坐标: 41417183-41419259 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002364`
名称	SmilChr02G002364
描述	rac-like GTP-binding protein RAC13
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	41417183 - 41419259 / `-`

ID 对照

NCBI Gene ID	`LOC131013475`
GeneID	`131013475`
locus_tag	`-`
NCBI Name	`LOC131013475`
原始查询	`SmilChr02G002364`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rac-like GTP-binding protein RAC13
产物	rac-like GTP-binding protein RAC13
Arabidopsis	`AT5G45970` (RAC2) RAC-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:834637] identity=87.7; qcov=0.913; evalue=3.76e-118; confidence=high
Rice	`Os02g0312600` (OSRAC7) - identity=81.2; qcov=1; evalue=9.26e-121; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005634 (nucleus); GO:0005856 (cytoskeleton); GO:0005886 (plasma membrane); GO:0005938 (cell cortex); GO:0007015 (actin filament organization); GO:0007163 (establishment or maintenance of cell polarity); GO:0007264 (small GTPase-mediated signal transduction); GO:0008360 (regulation of cell shape); GO:0019901 (protein kinase binding); GO:0030865 (cortical cytoskeleton organization); GO:0031410 (cytoplasmic vesicle); GO:0032956 (regulation of actin cytoskeleton organization); GO:0042995 (cell projection)
KEGG	smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04518 (Integrin signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil04620 (Toll-like receptor signaling pathway - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage))
Pfam	PF00071 (Ras); PF08477 (Roc)
InterPro	-
eggNOG	-
NR	GeneID:131013475

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057797551.1`
2	Cytoplasm	细胞质	0.40000	`XP_057797551.1`
3	Cytosol	细胞质基质	0.20000	`XP_057797551.1`
4	Cell projection	细胞突起	0.20000	`XP_057797551.1`
5	Nucleus	细胞核	0.00000	`XP_057797551.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:41417497`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr2:41417546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B130,B54,C81
`Chr2:41417757`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B43,B68
`Chr2:41418139`	`A`	`AT`	1bp_insertion	frameshift_variant	7	B114,B120,B14,B67,B91,C36,C7
`Chr2:41418159`	`ATT`	`A`	2bp_deletion	frameshift_variant	7	B114,B120,B14,B67,B91,C36,C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797551.1

196 aa

196

Roc

Ras

PF08477 Roc 8-121 aa PF00071 Ras 8-177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797551.1`	Pfam	`PF08477`	Roc	Domain	8	121	1.5e-23	84.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057797551.1`	Pfam	`PF00071`	Ras	Domain	8	177	9e-53	178.9	Ras family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941568.1
TTTTCTTACATCAAATGAAATATTTGACAAACAGTATATATAATTTGTACCATAAAAACTAGAATGCAAAAATCTACAAACTCAGCATAACAAAAATTGAGAGTTGTAAGAAAAAAGAGATGAGTAGTGCTAGATTTATCAAGTGTGTGACCGTGGGAGATGGCGCCGTGGGGAAAACGTGCATGCTCATTTCCTACACCAGCAATACCTTCCCTACTGATTATGTTCCAACTGTTTTCGACAATTTTAGTGCTAACGTG...

CDS

1 records

下载 CDS FASTA

LOC131013475
ATGAGTAGTGCTAGATTTATCAAGTGTGTGACCGTGGGAGATGGCGCCGTGGGGAAAACGTGCATGCTCATTTCCTACACCAGCAATACCTTCCCTACTGATTATGTTCCAACTGTTTTCGACAATTTTAGTGCTAACGTGATCGTTGATGGGAGCACAGTTAACATAGGCCTCTGGGACACAGCTGGGCAAGAAGATTATAACCGGTTGAGGCCTCTAAGTTACAGAGGAGCTGATGTATTTCTGCTAGCATTTTCTAT...

Protein

1 records

下载 Protein FASTA

XP_057797551.1
MSSARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVIVDGSTVNIGLWDTAGQEDYNRLRPLSYRGADVFLLAFSITSKASYENIYKKWVPELRHYTRNIPIVLVGTKSDLREDKQYLIDHPGAIAITTEQGEELRKMIGAVAYLECSAKTQQNVKAVFDTAIKVVLRPPKIKKKLHQWRGCIFL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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