当前解析结果
SmilChr02G002377| 统一新 Gene ID | SmilChr02G002377 |
|---|---|
| 名称 | SmilChr02G002377 |
| 描述 | CBL-interacting serine/threonine-protein kinase 12-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 41660897 - 41662976 / + |
| NCBI Gene ID | LOC131013490 |
|---|---|
| GeneID | 131013490 |
| locus_tag | - |
| NCBI Name | LOC131013490 |
| 原始查询 | SmilChr02G002377 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting serine/threonine-protein kinase 12-like |
| 产物 | CBL-interacting serine/threonine-protein kinase 12-like |
| Arabidopsis | AT4G18700 (CIPK12)CBL-interacting protein kinase 12 [Source:NCBI gene (formerly Entrezgene);Acc:827604] identity=76.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0514200 (OsCIPK19)- identity=64.7; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03109 (ABC1); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013490 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057797579.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057797579.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057797579.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057797579.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797579.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:41661596 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,B76,C49 |
Chr2:41661614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,B59,D9 |
Chr2:41661770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,B39 |
Chr2:41661781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B98,C22,D5 |
Chr2:41661810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,B76,C49 |
Chr2:41661869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B130,B60,B73,C3,C86 |
Chr2:41661890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr2:41661893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A25,B120,B129,B43,C56 |
Chr2:41661896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B46,B56,C41 |
Chr2:41661897 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr2:41661899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr2:41661963 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B22,C25,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797579.1PF00069
Pkinase 30-284 aa
PF07714
PK_Tyr_Ser-Thr 32-280 aa
PF03109
ABC1 99-187 aa
PF14531
Kinase-like 123-270 aa
PF03822
NAF 339-396 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797579.1 |
Pfam | PF00069 |
Pkinase | Domain | 30 | 284 | 3.3e-76 | 256.9 | Protein kinase domain |
XP_057797579.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 32 | 280 | 5.9e-38 | 131.4 | Protein tyrosine and serine/threonine kinase |
XP_057797579.1 |
Pfam | PF03109 |
ABC1 | Domain | 99 | 187 | 2.5e-08 | 34.1 | ABC1 atypical kinase-like domain |
XP_057797579.1 |
Pfam | PF14531 |
Kinase-like | Family | 123 | 270 | 8.9e-07 | 29.2 | Kinase-like |
XP_057797579.1 |
Pfam | PF03822 |
NAF | Domain | 339 | 396 | 3.7e-23 | 82.1 | NAF domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。