当前解析结果
SmilChr02G002378| 统一新 Gene ID | SmilChr02G002378 |
|---|---|
| 名称 | SmilChr02G002378 |
| 描述 | CBL-interacting protein kinase 5-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 41675976 - 41678105 / - |
| NCBI Gene ID | LOC131013491 |
|---|---|
| GeneID | 131013491 |
| locus_tag | - |
| NCBI Name | LOC131013491 |
| 原始查询 | SmilChr02G002378 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CBL-interacting protein kinase 5-like |
| 产物 | CBL-interacting protein kinase 5-like |
| Arabidopsis | AT5G45820 (CIPK20)CBL-interacting protein kinase 20 [Source:NCBI gene (formerly Entrezgene);Acc:834622] identity=67.3; qcov=0.975; evalue=0; confidence=high |
| Rice | Os01g0206700 (OsCIPK05)- identity=65.5; qcov=0.989; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF03109 (ABC1); PF03822 (NAF); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013491 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057797581.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057797581.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057797581.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057797581.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797581.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:41676427 |
G |
A |
EMS_canonical_SNV | stop_gained | 23 | A14,A2,A5,B10,B118,B121,B129,B137,B29,B37,B46,B58,C10,C31,C37,C5,C50,C53,C84,C85,D2,D5,D6 |
Chr2:41676436 |
GCC |
G |
2bp_deletion | frameshift_variant | 27 | A14,A2,A5,B10,B111,B118,B120,B121,B129,B137,B29,B37,B46,B58,B6,C10,C27,C31,C37,C5,C50,C53,C78,C84,C85,D5,D6 |
Chr2:41676468 |
C |
CTG |
2bp_insertion | frameshift_variant | 19 | A2,A5,B111,B118,B121,B122,B129,B137,B46,B51,B58,B6,C27,C37,C50,C53,C84,C85,D5 |
Chr2:41676470 |
GTC |
G |
2bp_deletion | frameshift_variant | 19 | A2,A5,B111,B118,B121,B122,B129,B137,B46,B51,B58,B6,C27,C37,C50,C53,C84,C85,D5 |
Chr2:41676473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr2:41676501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,C10 |
Chr2:41676503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,B54,C81 |
Chr2:41676506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,C10 |
Chr2:41676507 |
A |
ATC |
2bp_insertion | frameshift_variant | 2 | B137,B58 |
Chr2:41676507 |
A |
ATC |
2bp_insertion | CDS_variant | 2 | B137,B58 |
Chr2:41676536 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr2:41676570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B63,B81,B83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797581.1PF00069
Pkinase 22-276 aa
PF07714
PK_Tyr_Ser-Thr 23-272 aa
PF03109
ABC1 93-179 aa
PF14531
Kinase-like 115-260 aa
PF03822
NAF 316-373 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797581.1 |
Pfam | PF00069 |
Pkinase | Domain | 22 | 276 | 1.1e-76 | 258.4 | Protein kinase domain |
XP_057797581.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 23 | 272 | 1.9e-43 | 149.4 | Protein tyrosine and serine/threonine kinase |
XP_057797581.1 |
Pfam | PF03109 |
ABC1 | Domain | 93 | 179 | 1.6e-08 | 34.8 | ABC1 atypical kinase-like domain |
XP_057797581.1 |
Pfam | PF14531 |
Kinase-like | Family | 115 | 260 | 6.1e-08 | 33.0 | Kinase-like |
XP_057797581.1 |
Pfam | PF03822 |
NAF | Domain | 316 | 373 | 4.4e-20 | 72.3 | NAF domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。