Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002382`

染色体: Chr02 坐标: 41720892-41726198 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002382`
名称	SmilChr02G002382
描述	protein MALE DISCOVERER 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	41720892 - 41726198 / `-`

ID 对照

NCBI Gene ID	`LOC131013493`
GeneID	`131013493`
locus_tag	`-`
NCBI Name	`LOC131013493`
原始查询	`SmilChr02G002382`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein MALE DISCOVERER 1-like
产物	protein MALE DISCOVERER 1-like
Arabidopsis	`AT5G45840` (AT5G45840) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834624] identity=49.4; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0206800` - identity=49.9; qcov=0.994; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131013493

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057797583.1`
2	Nucleus	细胞核	0.00000	`XP_057797583.1`
3	Chromosome	染色体	0.00000	`XP_057797583.1`
4	Centromere	着丝粒	0.00000	`XP_057797583.1`
5	Chromatin	染色质	0.00000	`XP_057797583.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:41721438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr2:41721942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:41722075`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B123,B36,B51
`Chr2:41722448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B39
`Chr2:41722721`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,A13,B117
`Chr2:41723021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr2:41723033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:41723108`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr2:41723261`	`CT`	`C`	1bp_deletion	frameshift_variant	1	A14
`Chr2:41723261`	`CT`	`C`	1bp_deletion	CDS_variant	1	A14
`Chr2:41723284`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr2:41723347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797583.1

696 aa

348

696

LRRNT_2

LRR_8

LRR_1

LRR_4

LRR_1

PK_Tyr_Ser-Thr

Pkinase

PF08263 LRRNT_2 35-75 aa PF13855 LRR_8 82-138 aa PF13855 LRR_8 102-161 aa PF00560 LRR_1 103-125 aa PF12799 LRR_4 103-139 aa PF00560 LRR_1 128-149 aa PF00560 LRR_1 151-171 aa PF07714 PK_Tyr_Ser-Thr 413-665 aa PF00069 Pkinase 430-663 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797583.1`	Pfam	`PF08263`	LRRNT_2	Family	35	75	2.9e-12	47.4	Leucine rich repeat N-terminal domain
`XP_057797583.1`	Pfam	`PF13855`	LRR_8	Repeat	82	138	7.5e-16	58.4	Leucine rich repeat
`XP_057797583.1`	Pfam	`PF13855`	LRR_8	Repeat	102	161	7.5e-16	58.4	Leucine rich repeat
`XP_057797583.1`	Pfam	`PF00560`	LRR_1	Repeat	103	125	3.2e-14	50.7	Leucine Rich Repeat
`XP_057797583.1`	Pfam	`PF12799`	LRR_4	Repeat	103	139	9.8e-08	32.7	Leucine Rich repeats (2 copies)
`XP_057797583.1`	Pfam	`PF00560`	LRR_1	Repeat	128	149	3.2e-14	50.7	Leucine Rich Repeat
`XP_057797583.1`	Pfam	`PF00560`	LRR_1	Repeat	151	171	3.2e-14	50.7	Leucine Rich Repeat
`XP_057797583.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	413	665	3.3e-23	83.0	Protein tyrosine and serine/threonine kinase
`XP_057797583.1`	Pfam	`PF00069`	Pkinase	Domain	430	663	4.6e-18	66.3	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057941600.1
TGGTGTGAGGGGGGCGTAAGGGAGAGAAGAGAATGAACGAAAACAAACTTTTGTTTTTCTTTAGAGAGAGAAAAGAAGAGAGAGAAAGATTTTCCCCACTTCCCTTCTCTTTCAGAGAAAAGATGGTCGAGGAGAGTTTCAACCTCTGAGATCATCCTGAAAAGGGTAGTCAAGAAAATCACGCTCCAATTCCAATCCGACTAACTGAAGCTTGAATCTCGGAGACAATTTAGCCAGGTTATGCCGTTGTTCGTGAATAC...

CDS

1 records

下载 CDS FASTA

LOC131013493
ATGGTTCAGCAAGCAATGAGCGGTAGATGGACCGCTTGTGGAGCTCAGTTGTTTTGTTTCGCATTTTTAGTCCTTGTATTGAGAATTCATGGTTGCTCTTCCCTCAATCCGGAAGGATATGCATTGCTGCAGTTTCGAGCTAAGGTGGATTTTGATCCATCTGGAGCTTTAGCGAATTGGAATCCAGATGACTGTAGCCCGTGCACTTGGTCGGGTGTTCATTGTCTGGACGGTAAAGTGCATATGCTGGATCTCAATGG...

Protein

1 records

下载 Protein FASTA

XP_057797583.1
MVQQAMSGRWTACGAQLFCFAFLVLVLRIHGCSSLNPEGYALLQFRAKVDFDPSGALANWNPDDCSPCTWSGVHCLDGKVHMLDLNGQDLVGVLVPELANLSHLRVLDLSKNRLSGTIPHEFGQLTALEVLDLRNNKFTGTVPTELGRLHSLKRLLLCNNSFEGRIPSEIGKRGLLSDGKCNDIHAAAAGVGCMNRKFGRCTWQSILDRSQKSNPFQVPARGAILHYLNLYQLFKFGSESLHNQPDACAIDLPESSVRWN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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