Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002410`

染色体: Chr02 坐标: 42052869-42056635 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002410`
名称	SmilChr02G002410
描述	protein CHUP1, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	42052869 - 42056635 / `-`

ID 对照

NCBI Gene ID	`LOC131013518`
GeneID	`131013518`
locus_tag	`-`
NCBI Name	`LOC131013518`
原始查询	`SmilChr02G002410`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein CHUP1, chloroplastic-like
产物	protein CHUP1%2C chloroplastic-like
Arabidopsis	`AT4G18570` (AT4G18570) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827588] identity=74; qcov=0.465; evalue=3.02e-139; confidence=medium
Rice	`Os05g0573900` - identity=73.2; qcov=0.386; evalue=4.96e-125; confidence=low
GO	GO:0009658 (chloroplast organization); GO:0009707 (chloroplast outer membrane)
KEGG	-
Pfam	PF26700 (IPGAL1_C); PF30907 (IPGA1_CC)
InterPro	-
eggNOG	-
NR	GeneID:131013518

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057797607.1`
2	Cytoskeleton	细胞骨架	0.60000	`XP_057797607.1`
3	Cytosol	细胞质基质	0.60000	`XP_057797607.1`
4	Nucleus	细胞核	0.00000	`XP_057797607.1`
5	Chromosome	染色体	0.00000	`XP_057797607.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:42053158`	`GA`	`G`	1bp_deletion	frameshift_variant	10	A14,A23,B1,B100,B35,B91,C36,C43,C82,D2
`Chr2:42053160`	`A`	`AC`	1bp_insertion	frameshift_variant	183	A1,A11,A13,A14,A15,A16,A18,A19,A2,A23,A3,A4,A5,A7,B1,B100,B102,B104,B105,B106,B107,B108,B109,B11,B111,B112,B113,B114,B117,B12,B120,B122,B123,B124,B128,B129,B132,B134,B135,B136,B137,B138,B139,B14,B140,B16,B17,B20,B21,B24,B25,B26,B27,B29,B3,B30,B32,B33,B35,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B49,B5,B51,B53,B54,B55,B56,B57,B59,B6,B60,B62,B64,B65,B66,B68,B69,B71,B72,B74,B76,B77,B78,B79,B8,B80,B83,B85,B87,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C11,C12,C13,C14,C16,C19,C2,C20,C21,C22,C23,C25,C26,C27,C29,C3,C31,C32,C33,C34,C36,C4,C40,C42,C43,C44,C45,C48,C49,C5,C50,C52,C53,C54,C56,C57,C59,C6,C60,C61,C62,C63,C65,C67,C68,C69,C7,C71,C72,C73,C74,C76,C78,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D11,D2,D3,D5,D6,D7,D8,D9
`Chr2:42053222`	`C`	`CA`	1bp_insertion	frameshift_variant	31	A11,A14,A22,A23,A3,A6,B1,B100,B104,B119,B124,B131,B17,B22,B32,B35,B58,B65,B66,B78,B82,B87,B91,C20,C25,C36,C43,C82,C87,D2,D3
`Chr2:42055325`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B124
`Chr2:42055325`	`GC`	`G`	1bp_deletion	CDS_variant	1	B124
`Chr2:42055340`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C11
`Chr2:42055340`	`GA`	`G`	1bp_deletion	CDS_variant	1	C11
`Chr2:42055393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B32,B41
`Chr2:42055464`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B78,B87
`Chr2:42055581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B2
`Chr2:42055590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B2
`Chr2:42055605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A23,B43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057797607.1

669 aa

334

669

IPGA1_CC

IPGAL1_C

PF30907 IPGA1_CC 70-160 aa PF26700 IPGAL1_C 474-599 aa

XP_057797608.1

637 aa

318

637

IPGA1_CC

IPGAL1_C

PF30907 IPGA1_CC 70-160 aa PF26700 IPGAL1_C 474-618 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057797607.1`	Pfam	`PF30907`	IPGA1_CC	Coiled-coil	70	160	6.5e-35	120.1	IPGA1 coiled-coil
`XP_057797607.1`	Pfam	`PF26700`	IPGAL1_C	Domain	474	599	1.6e-56	191.1	IPGAL1-like, C-terminal domain
`XP_057797608.1`	Pfam	`PF30907`	IPGA1_CC	Coiled-coil	70	160	1e-34	119.4	IPGA1 coiled-coil
`XP_057797608.1`	Pfam	`PF26700`	IPGAL1_C	Domain	474	618	3.4e-61	206.3	IPGAL1-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057941625.1
CTGAAAGTATGGATATTTGATGAGACAGGATCCAAGAAAAGAAGGCCGTTCCTCGATAATTGGTGTAGTAACTCACAAACAAATTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCACTCAACCCATAAACCACTCTCCAAAATACACTCTGTTACAGTCGTAACGACAACGACCCATGTAGTCTCGTCCTACTCTATCCACATTCCAAACCCCATTCTCAACTTGTAAATATTTCATTCATTTTCGCCGACTCCGATTTAT...

XM_057941624.1
GGATATTTGATGAGACAGGATCCAAGAAAAGAAGGCCGTTCCTCGATAATTGGTGTAGTAACTCACAAACAAATTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCACTCAACCCATAAACCACTCTCCAAAATACACTCTGTTACAGTCGTAACGACAACGACCCATGTAGTCTCGTCCTACTCTATCCACATTCCAAACCCCATTCTCAACTTGTAAATATTTCATTCATTTTCGCCGACTCCGATTTATCTCCAATTTT...

CDS

2 records

下载 CDS FASTA

LOC131013518
ATGGTCGCCGGCAAAGTTAAAACGGCAATGGGATTGCAGAAATCGCCAGCTCAACCGAAGCCCAAGCCCGACGCCTCCACGCCGAGCTCCGGCAAGCACCACCCGCAGGGCCAGAAAGGCTCCGCTGCCGCCTTCTCCCGCTCCTTCGGCGTCTACTTCCCACGCTCCTCCGCGCAGGTCCAGCCGCGCCCACCGGACGTCTCCGAGCTGATCCGCTTGGTCGAGGAGCTGCGCGAGCGGGAGTCACGCCTCAAGACGGA...

Protein

2 records

下载 Protein FASTA

XP_057797607.1
MVAGKVKTAMGLQKSPAQPKPKPDASTPSSGKHHPQGQKGSAAAFSRSFGVYFPRSSAQVQPRPPDVSELIRLVEELRERESRLKTELLEHKLLKESVAILPVLESEISSKDCEIERSRKKIECLEVENERLRNENEFLHMELTKQNHKYEEKIQYMQAELCDIKRAVAEHEETTSSSSSTPKLVDVTNNYHKYNFGAKVLRKCVTQSNIAANFCETVTSSKKDELSGAAESAEPSRHSRCDSEEIPETSEALMAIRSRA...

XP_057797608.1
MVAGKVKTAMGLQKSPAQPKPKPDASTPSSGKHHPQGQKGSAAAFSRSFGVYFPRSSAQVQPRPPDVSELIRLVEELRERESRLKTELLEHKLLKESVAILPVLESEISSKDCEIERSRKKIECLEVENERLRNENEFLHMELTKQNHKYEEKIQYMQAELCDIKRAVAEHEETTSSSSSTPKLVDVTNNYHKYNFGAKVLRKCVTQSNIAANFCETVTSSKKDELSGAAESAEPSRHSRCDSEEIPETSEALMAIRSRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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